PATZ1.H12CORE.1.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	PATZ1.H12CORE.1.P.C
Gene (human)	PATZ1 (GeneCards)
Gene synonyms (human)	PATZ, RIAZ, ZBTB19, ZNF278, ZSG
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	C

Motif length	10
Consensus	vRRGGMGGGG
GC content	78.45%
Information content (bits; total / per base)	11.568 / 1.157
Data sources	ChIP-Seq
Aligned words	960

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (12)	0.706	0.724	0.478	0.514	0.768	0.802	2.04	2.199	10.77	32.921

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	MAZ-like {2.3.4.8} (TFClass)
TFClass ID	TFClass: 2.3.4.8.3
HGNC	HGNC:13071
MGI
EntrezGene (human)	GeneID:23598 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	PATZ1_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9HBE1 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	PATZ1.H12CORE.1.P.C.pcm
PWM	PATZ1.H12CORE.1.P.C.pwm
PFM	PATZ1.H12CORE.1.P.C.pfm
Alignment	PATZ1.H12CORE.1.P.C.words.tsv
Threshold to P-value map	PATZ1.H12CORE.1.P.C.thr
Motif in other formats
JASPAR format	PATZ1.H12CORE.1.P.C_jaspar_format.txt
MEME format	PATZ1.H12CORE.1.P.C_meme_format.meme
Transfac format	PATZ1.H12CORE.1.P.C_transfac_format.txt
Homer format	PATZ1.H12CORE.1.P.C_homer_format_0.001.txt PATZ1.H12CORE.1.P.C_homer_format_0.0005.txt PATZ1.H12CORE.1.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	298.0	116.0	462.0	84.0
02	258.0	46.0	621.0	35.0
03	163.0	10.0	713.0	74.0
04	17.0	5.0	926.0	12.0
05	6.0	1.0	948.0	5.0
06	581.0	340.0	1.0	38.0
07	164.0	9.0	757.0	30.0
08	9.0	8.0	841.0	102.0
09	48.0	4.0	883.0	25.0
10	93.0	9.0	831.0	27.0

PFM

	A	C	G	T
01	0.31	0.121	0.481	0.088
02	0.269	0.048	0.647	0.036
03	0.17	0.01	0.743	0.077
04	0.018	0.005	0.965	0.013
05	0.006	0.001	0.988	0.005
06	0.605	0.354	0.001	0.04
07	0.171	0.009	0.789	0.031
08	0.009	0.008	0.876	0.106
09	0.05	0.004	0.92	0.026
10	0.097	0.009	0.866	0.028

PWM

	A	C	G	T
01	0.215	-0.719	0.652	-1.037
02	0.072	-1.622	0.946	-1.885
03	-0.384	-3.027	1.084	-1.161
04	-2.558	-3.583	1.345	-2.869
05	-3.444	-4.488	1.368	-3.583
06	0.88	0.346	-4.488	-1.806
07	-0.377	-3.116	1.144	-2.031
08	-3.116	-3.214	1.249	-0.846
09	-1.581	-3.744	1.298	-2.202
10	-0.937	-3.116	1.237	-2.13

Standard thresholds

P-value	Threshold
0.001	4.27659
0.0005	5.267865
0.0001	7.254475