MotifPATZ1.H12CORE.0.P.B
Gene (human)PATZ1
(GeneCards)
Gene synonyms (human)PATZ, RIAZ, ZBTB19, ZNF278, ZSG
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length23
ConsensusvKSGRMGGGRSbvSvRdRRRvnS
GC content73.21%
Information content (bits; total / per base)13.912 / 0.605
Data sourcesChIP-Seq
Aligned words959

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (12) 0.717 0.725 0.478 0.518 0.789 0.835 2.675 2.893 13.611 32.602
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMultiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamilyMAZ-like {2.3.4.8} (TFClass)
TFClass IDTFClass: 2.3.4.8.3
HGNCHGNC:13071
MGI
EntrezGene (human)GeneID:23598
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)PATZ1_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q9HBE1
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01282.0176.0377.0124.0
0274.062.0649.0174.0
03118.0211.0568.062.0
04120.013.0807.019.0
05155.065.0726.013.0
06456.0396.04.0103.0
0718.06.0717.0218.0
0819.010.0921.09.0
0985.023.0825.026.0
10286.040.0613.020.0
11190.0215.0524.030.0
1261.0422.0246.0230.0
13173.0220.0400.0166.0
1455.0169.0673.062.0
15292.0149.0448.070.0
16281.0134.0506.038.0
17175.0102.0500.0182.0
1887.060.0738.074.0
19174.0118.0606.061.0
20306.080.0541.032.0
21260.0185.0482.032.0
22178.0172.0431.0178.0
2364.0327.0490.078.0
PFM
ACGT
010.2940.1840.3930.129
020.0770.0650.6770.181
030.1230.220.5920.065
040.1250.0140.8420.02
050.1620.0680.7570.014
060.4750.4130.0040.107
070.0190.0060.7480.227
080.020.010.960.009
090.0890.0240.860.027
100.2980.0420.6390.021
110.1980.2240.5460.031
120.0640.440.2570.24
130.180.2290.4170.173
140.0570.1760.7020.065
150.3040.1550.4670.073
160.2930.140.5280.04
170.1820.1060.5210.19
180.0910.0630.770.077
190.1810.1230.6320.064
200.3190.0830.5640.033
210.2710.1930.5030.033
220.1860.1790.4490.186
230.0670.3410.5110.081
PWM
ACGT
010.161-0.3070.45-0.653
02-1.16-1.3320.991-0.318
03-0.702-0.1270.858-1.332
04-0.685-2.7981.209-2.456
05-0.432-1.2861.103-2.798
060.640.499-3.743-0.835
07-2.505-3.4431.091-0.094
08-2.456-3.0261.341-3.115
09-1.024-2.2791.231-2.165
100.175-1.7560.934-2.409
11-0.231-0.1080.778-2.03
12-1.3480.5620.026-0.041
13-0.324-0.0850.509-0.364
14-1.449-0.3471.028-1.332
150.196-0.4710.622-1.214
160.158-0.5760.743-1.805
17-0.312-0.8450.731-0.273
18-1.001-1.3641.12-1.16
19-0.318-0.7020.923-1.348
200.242-1.0830.81-1.969
210.081-0.2570.695-1.969
22-0.295-0.3290.583-0.295
23-1.3010.3080.711-1.108
Standard thresholds
P-value Threshold
0.001 3.73061
0.0005 4.72561
0.0001 6.81661