P5F1B.H12INVIVO.0.S.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	P5F1B.H12INVIVO.0.S.D
Gene (human)	POU5F1B (GeneCards)
Gene synonyms (human)	OCT4PG1, OTF3C, OTF3P1, POU5F1P1, POU5FLC20, POU5FLC8
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	17
Consensus	WRMWTATGCAAATKhvn
GC content	29.67%
Information content (bits; total / per base)	18.46 / 1.086
Data sources	HT-SELEX
Aligned words	7478

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Non-Methyl HT-SELEX, 2 experiments	median	0.998	0.997	0.994	0.992	0.965	0.961
Non-Methyl HT-SELEX, 2 experiments	best	1.0	0.999	0.998	0.998	0.988	0.986

TF superclass	Helix-turn-helix domains {3} (TFClass)
TF class	Homeo domain factors {3.1} (TFClass)
TF family	POU {3.1.10} (TFClass)
TF subfamily	POU5 {3.1.10.5} (TFClass)
TFClass ID	TFClass: 3.1.10.5.2
HGNC	HGNC:9223
MGI
EntrezGene (human)	GeneID:5462 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	P5F1B_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q06416 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	2
Methyl-HT-SELEX	0

PCM	P5F1B.H12INVIVO.0.S.D.pcm
PWM	P5F1B.H12INVIVO.0.S.D.pwm
PFM	P5F1B.H12INVIVO.0.S.D.pfm
Alignment	P5F1B.H12INVIVO.0.S.D.words.tsv
Threshold to P-value map	P5F1B.H12INVIVO.0.S.D.thr
Motif in other formats
JASPAR format	P5F1B.H12INVIVO.0.S.D_jaspar_format.txt
MEME format	P5F1B.H12INVIVO.0.S.D_meme_format.meme
Transfac format	P5F1B.H12INVIVO.0.S.D_transfac_format.txt
Homer format	P5F1B.H12INVIVO.0.S.D_homer_format_0.001.txt P5F1B.H12INVIVO.0.S.D_homer_format_0.0005.txt P5F1B.H12INVIVO.0.S.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	1423.0	866.0	648.0	4541.0
02	1921.75	569.75	4390.75	595.75
03	4015.0	2653.0	286.0	524.0
04	5338.0	110.0	788.0	1242.0
05	17.0	53.0	9.0	7399.0
06	7470.0	0.0	0.0	8.0
07	1.0	24.0	0.0	7453.0
08	1.0	3.0	6703.0	771.0
09	0.0	7348.0	14.0	116.0
10	6024.0	0.0	6.0	1448.0
11	6847.0	2.0	24.0	605.0
12	7332.0	3.0	119.0	24.0
13	404.0	148.0	177.0	6749.0
14	678.0	1019.0	1247.0	4534.0
15	3905.0	1191.0	741.0	1641.0
16	1955.75	1169.75	3405.75	946.75
17	1608.25	1820.25	2180.25	1869.25

PFM

	A	C	G	T
01	0.19	0.116	0.087	0.607
02	0.257	0.076	0.587	0.08
03	0.537	0.355	0.038	0.07
04	0.714	0.015	0.105	0.166
05	0.002	0.007	0.001	0.989
06	0.999	0.0	0.0	0.001
07	0.0	0.003	0.0	0.997
08	0.0	0.0	0.896	0.103
09	0.0	0.983	0.002	0.016
10	0.806	0.0	0.001	0.194
11	0.916	0.0	0.003	0.081
12	0.98	0.0	0.016	0.003
13	0.054	0.02	0.024	0.903
14	0.091	0.136	0.167	0.606
15	0.522	0.159	0.099	0.219
16	0.262	0.156	0.455	0.127
17	0.215	0.243	0.292	0.25

PWM

	A	C	G	T
01	-0.273	-0.768	-1.057	0.887
02	0.028	-1.186	0.853	-1.141
03	0.764	0.35	-1.871	-1.269
04	1.048	-2.814	-0.862	-0.408
05	-4.578	-3.523	-5.116	1.375
06	1.384	-6.733	-6.733	-5.209
07	-6.362	-4.268	-6.733	1.382
08	-6.362	-5.88	1.276	-0.884
09	-6.733	1.368	-4.748	-2.762
10	1.169	-6.733	-5.427	-0.255
11	1.297	-6.092	-4.268	-1.126
12	1.366	-5.88	-2.737	-4.268
13	-1.528	-2.522	-2.346	1.283
14	-1.012	-0.606	-0.404	0.885
15	0.736	-0.45	-0.924	-0.13
16	0.045	-0.468	0.599	-0.679
17	-0.15	-0.027	0.154	-0.0

Standard thresholds

P-value	Threshold
0.001	-0.69239
0.0005	1.03431
0.0001	4.60771