OZF.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	OZF.H12INVITRO.0.P.D
Gene (human)	ZNF146 (GeneCards)
Gene synonyms (human)	OZF
Gene (mouse)	Znf146
Gene synonyms (mouse)	Ozf, Zfp146
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	25
Consensus	CTTTTTYATGGCTGMATAGTATTCC
GC content	36.79%
Information content (bits; total / per base)	41.018 / 1.641
Data sources	ChIP-Seq
Aligned words	986

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	3 (19)	0.975	0.99	0.966	0.99	0.985	0.996	21.639	23.581	679.161	775.509

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF146-like {2.3.3.55} (TFClass)
TFClass ID	TFClass: 2.3.3.55.1
HGNC	HGNC:12931
MGI	MGI:1347092
EntrezGene (human)	GeneID:7705 (SSTAR profile)
EntrezGene (mouse)	GeneID:26465 (SSTAR profile)
UniProt ID (human)	OZF_HUMAN
UniProt ID (mouse)	OZF_MOUSE
UniProt AC (human)	Q15072 (TFClass)
UniProt AC (mouse)	Q8BQN6 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	3 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	OZF.H12INVITRO.0.P.D.pcm
PWM	OZF.H12INVITRO.0.P.D.pwm
PFM	OZF.H12INVITRO.0.P.D.pfm
Alignment	OZF.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	OZF.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	OZF.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	OZF.H12INVITRO.0.P.D_meme_format.meme
Transfac format	OZF.H12INVITRO.0.P.D_transfac_format.txt
Homer format	OZF.H12INVITRO.0.P.D_homer_format_0.001.txt OZF.H12INVITRO.0.P.D_homer_format_0.0005.txt OZF.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	126.0	841.0	4.0	15.0
02	13.0	215.0	2.0	756.0
03	1.0	0.0	0.0	985.0
04	1.0	15.0	16.0	954.0
05	0.0	1.0	1.0	984.0
06	2.0	1.0	2.0	981.0
07	20.0	307.0	24.0	635.0
08	936.0	20.0	16.0	14.0
09	27.0	41.0	28.0	890.0
10	12.0	6.0	921.0	47.0
11	21.0	1.0	958.0	6.0
12	1.0	945.0	16.0	24.0
13	6.0	25.0	1.0	954.0
14	30.0	6.0	942.0	8.0
15	155.0	730.0	4.0	97.0
16	850.0	9.0	127.0	0.0
17	0.0	0.0	2.0	984.0
18	976.0	1.0	6.0	3.0
19	149.0	31.0	802.0	4.0
20	1.0	3.0	0.0	982.0
21	976.0	0.0	9.0	1.0
22	0.0	44.0	4.0	938.0
23	1.0	0.0	2.0	983.0
24	2.0	974.0	0.0	10.0
25	2.0	963.0	2.0	19.0

PFM

	A	C	G	T
01	0.128	0.853	0.004	0.015
02	0.013	0.218	0.002	0.767
03	0.001	0.0	0.0	0.999
04	0.001	0.015	0.016	0.968
05	0.0	0.001	0.001	0.998
06	0.002	0.001	0.002	0.995
07	0.02	0.311	0.024	0.644
08	0.949	0.02	0.016	0.014
09	0.027	0.042	0.028	0.903
10	0.012	0.006	0.934	0.048
11	0.021	0.001	0.972	0.006
12	0.001	0.958	0.016	0.024
13	0.006	0.025	0.001	0.968
14	0.03	0.006	0.955	0.008
15	0.157	0.74	0.004	0.098
16	0.862	0.009	0.129	0.0
17	0.0	0.0	0.002	0.998
18	0.99	0.001	0.006	0.003
19	0.151	0.031	0.813	0.004
20	0.001	0.003	0.0	0.996
21	0.99	0.0	0.009	0.001
22	0.0	0.045	0.004	0.951
23	0.001	0.0	0.002	0.997
24	0.002	0.988	0.0	0.01
25	0.002	0.977	0.002	0.019

PWM

	A	C	G	T
01	-0.664	1.222	-3.77	-2.698
02	-2.825	-0.136	-4.2	1.116
03	-4.512	-4.97	-4.97	1.38
04	-4.512	-2.698	-2.639	1.348
05	-4.97	-4.512	-4.512	1.379
06	-4.2	-4.512	-4.2	1.376
07	-2.436	0.218	-2.267	0.942
08	1.329	-2.436	-2.639	-2.759
09	-2.157	-1.76	-2.122	1.279
10	-2.895	-3.47	1.313	-1.628
11	-2.391	-4.512	1.352	-3.47
12	-4.512	1.339	-2.639	-2.267
13	-3.47	-2.229	-4.512	1.348
14	-2.057	-3.47	1.336	-3.24
15	-0.46	1.081	-3.77	-0.922
16	1.233	-3.142	-0.657	-4.97
17	-4.97	-4.97	-4.2	1.379
18	1.371	-4.512	-3.47	-3.962
19	-0.499	-2.026	1.175	-3.77
20	-4.512	-3.962	-4.97	1.377
21	1.371	-4.97	-3.142	-4.512
22	-4.97	-1.692	-3.77	1.331
23	-4.512	-4.97	-4.2	1.378
24	-4.2	1.369	-4.97	-3.053
25	-4.2	1.358	-4.2	-2.483

Standard thresholds

P-value	Threshold
0.001	-18.32859
0.0005	-15.94349
0.0001	-10.80489