MotifOVOL1.H12INVIVO.0.SM.D
Gene (human)OVOL1
(GeneCards)
Gene synonyms (human)
Gene (mouse)Ovol1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length14
ConsensusnRnATAACGGThhn
GC content42.17%
Information content (bits; total / per base)15.713 / 1.122
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9850

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 1.0 0.999 0.999 0.999 0.999 0.998
best 1.0 1.0 1.0 0.999 0.999 0.999
Methyl HT-SELEX, 1 experiments median 1.0 1.0 1.0 0.999 0.999 0.999
best 1.0 1.0 1.0 0.999 0.999 0.999
Non-Methyl HT-SELEX, 1 experiments median 0.999 0.999 0.999 0.999 0.999 0.998
best 0.999 0.999 0.999 0.999 0.999 0.998

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.983 0.906 0.965 0.64
batch 2 0.85 0.668 0.766 0.567
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyOVOL {2.3.3.17} (TFClass)
TFClass IDTFClass: 2.3.3.17.1
HGNCHGNC:8525
MGIMGI:1330290
EntrezGene (human)GeneID:5017
(SSTAR profile)
EntrezGene (mouse)GeneID:18426
(SSTAR profile)
UniProt ID (human)OVOL1_HUMAN
UniProt ID (mouse)OVOL1_MOUSE
UniProt AC (human)O14753
(TFClass)
UniProt AC (mouse)Q9WTJ2
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
011961.752731.753052.752103.75
024840.25404.253559.251046.25
032767.02239.02561.02283.0
048260.0649.0860.081.0
052.04.03.09841.0
069850.00.00.00.0
079850.00.00.00.0
080.09850.00.00.0
092.05.09842.01.0
101.01.09846.02.0
11411.062.0195.09182.0
122820.03019.0534.03477.0
131760.253970.25427.253692.25
142057.02691.01646.03456.0
PFM
ACGT
010.1990.2770.310.214
020.4910.0410.3610.106
030.2810.2270.260.232
040.8390.0660.0870.008
050.00.00.00.999
061.00.00.00.0
071.00.00.00.0
080.01.00.00.0
090.00.0010.9990.0
100.00.01.00.0
110.0420.0060.020.932
120.2860.3060.0540.353
130.1790.4030.0430.375
140.2090.2730.1670.351
PWM
ACGT
01-0.2270.1040.215-0.157
020.675-1.8020.368-0.855
030.116-0.0950.039-0.076
041.21-1.331-1.05-3.387
05-6.352-5.97-6.1421.385
061.386-6.977-6.977-6.977
071.386-6.977-6.977-6.977
08-6.9771.386-6.977-6.977
09-6.352-5.8221.385-6.616
10-6.616-6.6161.385-6.352
11-1.786-3.646-2.5251.315
120.1350.204-1.5250.345
13-0.3350.477-1.7470.405
14-0.180.089-0.4020.339
Standard thresholds
P-value Threshold
0.001 -0.65114
0.0005 1.18541
0.0001 5.14071