MotifOSR2.H12INVIVO.1.M.C
Gene (human)OSR2
(GeneCards)
Gene synonyms (human)
Gene (mouse)Osr2
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
C
Motif length18
ConsensusnbhGCTACTGWWKbvSYn
GC content48.19%
Information content (bits; total / per base)18.198 / 1.011
Data sourcesMethyl-HT-SELEX
Aligned words1058

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (12) 0.607 0.651 0.49 0.547 0.66 0.74 1.696 2.017 33.443 146.215

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.844 0.828 0.69 0.694 0.595 0.615
best 0.85 0.832 0.713 0.704 0.615 0.626
Methyl HT-SELEX, 1 experiments median 0.838 0.832 0.667 0.685 0.574 0.605
best 0.838 0.832 0.667 0.685 0.574 0.605
Non-Methyl HT-SELEX, 1 experiments median 0.85 0.824 0.713 0.704 0.615 0.626
best 0.85 0.824 0.713 0.704 0.615 0.626

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 5.917 1.971 0.091 0.067
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.9
HGNCHGNC:15830
MGIMGI:1930813
EntrezGene (human)GeneID:116039
(SSTAR profile)
EntrezGene (mouse)GeneID:107587
(SSTAR profile)
UniProt ID (human)OSR2_HUMAN
UniProt ID (mouse)OSR2_MOUSE
UniProt AC (human)Q8N2R0
(TFClass)
UniProt AC (mouse)Q91ZD1
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
01334.75195.75286.75240.75
02137.0147.0371.0403.0
03190.0150.093.0625.0
040.02.01056.00.0
050.01058.00.00.0
060.00.00.01058.0
071058.00.00.00.0
080.01058.00.00.0
090.03.00.01055.0
100.00.01022.036.0
11525.019.019.0495.0
12554.01.0219.0284.0
1331.0126.0562.0339.0
14102.0136.0225.0595.0
15623.0158.0191.086.0
1686.0167.0697.0108.0
1798.5761.569.5128.5
18416.0199.0184.0259.0
PFM
ACGT
010.3160.1850.2710.228
020.1290.1390.3510.381
030.180.1420.0880.591
040.00.0020.9980.0
050.01.00.00.0
060.00.00.01.0
071.00.00.00.0
080.01.00.00.0
090.00.0030.00.997
100.00.00.9660.034
110.4960.0180.0180.468
120.5240.0010.2070.268
130.0290.1190.5310.32
140.0960.1290.2130.562
150.5890.1490.1810.081
160.0810.1580.6590.102
170.0930.720.0660.121
180.3930.1880.1740.245
PWM
ACGT
010.234-0.2990.08-0.093
02-0.652-0.5820.3360.419
03-0.328-0.562-1.0330.856
04-5.03-4.2651.379-5.03
05-5.031.381-5.03-5.03
06-5.03-5.03-5.031.381
071.381-5.03-5.03-5.03
08-5.031.381-5.03-5.03
09-5.03-4.028-5.031.379
10-5.03-5.031.347-1.954
110.682-2.552-2.5520.624
120.736-4.576-0.1870.071
13-2.096-0.7340.750.247
14-0.943-0.659-0.1610.807
150.853-0.511-0.323-1.11
16-1.11-0.4560.965-0.886
17-0.9771.053-1.318-0.715
180.45-0.282-0.36-0.021
Standard thresholds
P-value Threshold
0.001 -0.51324
0.0005 1.23861
0.0001 4.69886