OSR2.H12INVIVO.0.PSM.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	OSR2.H12INVIVO.0.PSM.A
Gene (human)	OSR2 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Osr2
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	9
Consensus	bdvYTnCTK
GC content	50.92%
Information content (bits; total / per base)	6.392 / 0.71
Data sources	ChIP-Seq + HT-SELEX + Methyl-HT-SELEX
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (12)	0.734	0.845	0.62	0.754	0.683	0.783	1.749	2.194	39.879	161.921

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.8	0.778	0.669	0.666	0.587	0.6
Overall, 2 experiments	best	0.801	0.786	0.684	0.67	0.601	0.606
Methyl HT-SELEX, 1 experiments	median	0.801	0.786	0.654	0.662	0.573	0.594
Methyl HT-SELEX, 1 experiments	best	0.801	0.786	0.654	0.662	0.573	0.594
Non-Methyl HT-SELEX, 1 experiments	median	0.799	0.77	0.684	0.67	0.601	0.606
Non-Methyl HT-SELEX, 1 experiments	best	0.799	0.77	0.684	0.67	0.601	0.606

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	2.493	0.794	0.055	0.075

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.9
HGNC	HGNC:15830
MGI	MGI:1930813
EntrezGene (human)	GeneID:116039 (SSTAR profile)
EntrezGene (mouse)	GeneID:107587 (SSTAR profile)
UniProt ID (human)	OSR2_HUMAN
UniProt ID (mouse)	OSR2_MOUSE
UniProt AC (human)	Q8N2R0 (TFClass)
UniProt AC (mouse)	Q91ZD1 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	1
Methyl-HT-SELEX	1

PCM	OSR2.H12INVIVO.0.PSM.A.pcm
PWM	OSR2.H12INVIVO.0.PSM.A.pwm
PFM	OSR2.H12INVIVO.0.PSM.A.pfm
Alignment	OSR2.H12INVIVO.0.PSM.A.words.tsv
Threshold to P-value map	OSR2.H12INVIVO.0.PSM.A.thr
Motif in other formats
JASPAR format	OSR2.H12INVIVO.0.PSM.A_jaspar_format.txt
MEME format	OSR2.H12INVIVO.0.PSM.A_meme_format.meme
Transfac format	OSR2.H12INVIVO.0.PSM.A_transfac_format.txt
Homer format	OSR2.H12INVIVO.0.PSM.A_homer_format_0.001.txt OSR2.H12INVIVO.0.PSM.A_homer_format_0.0005.txt OSR2.H12INVIVO.0.PSM.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	141.0	334.0	161.0	364.0
02	300.0	71.0	225.0	404.0
03	140.0	147.0	601.0	112.0
04	36.0	741.0	11.0	212.0
05	17.0	171.0	7.0	805.0
06	324.0	224.0	192.0	260.0
07	104.0	876.0	4.0	16.0
08	40.0	69.0	1.0	890.0
09	14.0	70.0	678.0	238.0

PFM

	A	C	G	T
01	0.141	0.334	0.161	0.364
02	0.3	0.071	0.225	0.404
03	0.14	0.147	0.601	0.112
04	0.036	0.741	0.011	0.212
05	0.017	0.171	0.007	0.805
06	0.324	0.224	0.192	0.26
07	0.104	0.876	0.004	0.016
08	0.04	0.069	0.001	0.89
09	0.014	0.07	0.678	0.238

PWM

	A	C	G	T
01	-0.567	0.288	-0.436	0.374
02	0.181	-1.242	-0.105	0.477
03	-0.574	-0.526	0.873	-0.795
04	-1.898	1.082	-2.985	-0.164
05	-2.598	-0.377	-3.362	1.165
06	0.258	-0.109	-0.262	0.039
07	-0.867	1.249	-3.783	-2.653
08	-1.797	-1.27	-4.525	1.265
09	-2.773	-1.255	0.993	-0.049

Standard thresholds

P-value	Threshold
0.001	5.106925
0.0005	5.68576
0.0001	6.63544