| Motif | OSR1.H12INVIVO.0.SM.D |
| Gene (human) | OSR1 (GeneCards) |
| Gene synonyms (human) | ODD |
| Gene (mouse) | Osr1 |
| Gene synonyms (mouse) | Odd1 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | OSR1.H12INVIVO.0.SM.D |
| Gene (human) | OSR1 (GeneCards) |
| Gene synonyms (human) | ODD |
| Gene (mouse) | Osr1 |
| Gene synonyms (mouse) | Odd1 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 11 |
| Consensus | hGCTACTGKdn |
| GC content | 52.76% |
| Information content (bits; total / per base) | 13.711 / 1.246 |
| Data sources | HT-SELEX + Methyl-HT-SELEX |
| Aligned words | 9869 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 2 experiments | median | 0.995 | 0.993 | 0.972 | 0.966 | 0.876 | 0.879 |
| best | 0.997 | 0.996 | 0.992 | 0.988 | 0.944 | 0.938 | |
| Methyl HT-SELEX, 1 experiments | median | 0.994 | 0.99 | 0.952 | 0.944 | 0.809 | 0.819 |
| best | 0.994 | 0.99 | 0.952 | 0.944 | 0.809 | 0.819 | |
| Non-Methyl HT-SELEX, 1 experiments | median | 0.997 | 0.996 | 0.992 | 0.988 | 0.944 | 0.938 |
| best | 0.997 | 0.996 | 0.992 | 0.988 | 0.944 | 0.938 | |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | Other with up to three adjacent zinc fingers {2.3.2} (TFClass) |
| TF subfamily | Other {2.3.2.4} (TFClass) |
| TFClass ID | TFClass: 2.3.2.4.7 |
| HGNC | HGNC:8111 |
| MGI | MGI:1344424 |
| EntrezGene (human) | GeneID:130497 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:23967 (SSTAR profile) |
| UniProt ID (human) | OSR1_HUMAN |
| UniProt ID (mouse) | OSR1_MOUSE |
| UniProt AC (human) | Q8TAX0 (TFClass) |
| UniProt AC (mouse) | Q9WVG7 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 1 |
| PCM | OSR1.H12INVIVO.0.SM.D.pcm |
| PWM | OSR1.H12INVIVO.0.SM.D.pwm |
| PFM | OSR1.H12INVIVO.0.SM.D.pfm |
| Alignment | OSR1.H12INVIVO.0.SM.D.words.tsv |
| Threshold to P-value map | OSR1.H12INVIVO.0.SM.D.thr |
| Motif in other formats | |
| JASPAR format | OSR1.H12INVIVO.0.SM.D_jaspar_format.txt |
| MEME format | OSR1.H12INVIVO.0.SM.D_meme_format.meme |
| Transfac format | OSR1.H12INVIVO.0.SM.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2410.5 | 2255.5 | 1397.5 | 3805.5 |
| 02 | 145.0 | 81.0 | 9639.0 | 4.0 |
| 03 | 0.0 | 9869.0 | 0.0 | 0.0 |
| 04 | 1.0 | 6.0 | 0.0 | 9862.0 |
| 05 | 9785.0 | 0.0 | 0.0 | 84.0 |
| 06 | 0.0 | 9869.0 | 0.0 | 0.0 |
| 07 | 0.0 | 4605.0 | 0.0 | 5264.0 |
| 08 | 99.0 | 17.0 | 9628.0 | 125.0 |
| 09 | 679.0 | 724.0 | 803.0 | 7663.0 |
| 10 | 2214.25 | 1116.25 | 2416.25 | 4122.25 |
| 11 | 1794.5 | 3169.5 | 1683.5 | 3221.5 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.244 | 0.229 | 0.142 | 0.386 |
| 02 | 0.015 | 0.008 | 0.977 | 0.0 |
| 03 | 0.0 | 1.0 | 0.0 | 0.0 |
| 04 | 0.0 | 0.001 | 0.0 | 0.999 |
| 05 | 0.991 | 0.0 | 0.0 | 0.009 |
| 06 | 0.0 | 1.0 | 0.0 | 0.0 |
| 07 | 0.0 | 0.467 | 0.0 | 0.533 |
| 08 | 0.01 | 0.002 | 0.976 | 0.013 |
| 09 | 0.069 | 0.073 | 0.081 | 0.776 |
| 10 | 0.224 | 0.113 | 0.245 | 0.418 |
| 11 | 0.182 | 0.321 | 0.171 | 0.326 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.023 | -0.09 | -0.568 | 0.433 |
| 02 | -2.819 | -3.389 | 1.362 | -5.971 |
| 03 | -6.979 | 1.386 | -6.979 | -6.979 |
| 04 | -6.618 | -5.696 | -6.979 | 1.385 |
| 05 | 1.377 | -6.979 | -6.979 | -3.354 |
| 06 | -6.979 | 1.386 | -6.979 | -6.979 |
| 07 | -6.979 | 0.624 | -6.979 | 0.757 |
| 08 | -3.194 | -4.852 | 1.361 | -2.965 |
| 09 | -1.288 | -1.224 | -1.121 | 1.133 |
| 10 | -0.108 | -0.792 | -0.021 | 0.513 |
| 11 | -0.318 | 0.25 | -0.382 | 0.267 |
| P-value | Threshold |
|---|---|
| 0.001 | 1.76404 |
| 0.0005 | 3.17674 |
| 0.0001 | 7.104695 |