MotifOSR1.H12INVIVO.0.SM.D
Gene (human)OSR1
(GeneCards)
Gene synonyms (human)ODD
Gene (mouse)Osr1
Gene synonyms (mouse)Odd1
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length11
ConsensushGCTACTGKdn
GC content52.76%
Information content (bits; total / per base)13.711 / 1.246
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9869

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.995 0.993 0.972 0.966 0.876 0.879
best 0.997 0.996 0.992 0.988 0.944 0.938
Methyl HT-SELEX, 1 experiments median 0.994 0.99 0.952 0.944 0.809 0.819
best 0.994 0.99 0.952 0.944 0.809 0.819
Non-Methyl HT-SELEX, 1 experiments median 0.997 0.996 0.992 0.988 0.944 0.938
best 0.997 0.996 0.992 0.988 0.944 0.938
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyOther with up to three adjacent zinc fingers {2.3.2} (TFClass)
TF subfamilyOther {2.3.2.4} (TFClass)
TFClass IDTFClass: 2.3.2.4.7
HGNCHGNC:8111
MGIMGI:1344424
EntrezGene (human)GeneID:130497
(SSTAR profile)
EntrezGene (mouse)GeneID:23967
(SSTAR profile)
UniProt ID (human)OSR1_HUMAN
UniProt ID (mouse)OSR1_MOUSE
UniProt AC (human)Q8TAX0
(TFClass)
UniProt AC (mouse)Q9WVG7
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
012410.52255.51397.53805.5
02145.081.09639.04.0
030.09869.00.00.0
041.06.00.09862.0
059785.00.00.084.0
060.09869.00.00.0
070.04605.00.05264.0
0899.017.09628.0125.0
09679.0724.0803.07663.0
102214.251116.252416.254122.25
111794.53169.51683.53221.5
PFM
ACGT
010.2440.2290.1420.386
020.0150.0080.9770.0
030.01.00.00.0
040.00.0010.00.999
050.9910.00.00.009
060.01.00.00.0
070.00.4670.00.533
080.010.0020.9760.013
090.0690.0730.0810.776
100.2240.1130.2450.418
110.1820.3210.1710.326
PWM
ACGT
01-0.023-0.09-0.5680.433
02-2.819-3.3891.362-5.971
03-6.9791.386-6.979-6.979
04-6.618-5.696-6.9791.385
051.377-6.979-6.979-3.354
06-6.9791.386-6.979-6.979
07-6.9790.624-6.9790.757
08-3.194-4.8521.361-2.965
09-1.288-1.224-1.1211.133
10-0.108-0.792-0.0210.513
11-0.3180.25-0.3820.267
Standard thresholds
P-value Threshold
0.001 1.76404
0.0005 3.17674
0.0001 7.104695