MotifONEC3.H12INVIVO.1.S.D
Gene (human)ONECUT3
(GeneCards)
Gene synonyms (human)
Gene (mouse)Onecut3
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
D
Motif length11
ConsensusnbATCGATTdn
GC content40.31%
Information content (bits; total / per base)13.536 / 1.231
Data sourcesHT-SELEX
Aligned words7023

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.972 0.951 0.904 0.894 0.814 0.829
best 0.99 0.981 0.987 0.977 0.981 0.96
Methyl HT-SELEX, 1 experiments median 0.97 0.95 0.977 0.954 0.981 0.96
best 0.97 0.95 0.977 0.954 0.981 0.96
Non-Methyl HT-SELEX, 3 experiments median 0.974 0.952 0.831 0.833 0.657 0.697
best 0.99 0.981 0.987 0.977 0.972 0.96
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyHD-CUT {3.1.9} (TFClass)
TF subfamilyONECUT {3.1.9.1} (TFClass)
TFClass IDTFClass: 3.1.9.1.3
HGNCHGNC:13399
MGIMGI:1891409
EntrezGene (human)GeneID:390874
(SSTAR profile)
EntrezGene (mouse)GeneID:246086
(SSTAR profile)
UniProt ID (human)ONEC3_HUMAN
UniProt ID (mouse)ONEC3_MOUSE
UniProt AC (human)O60422
(TFClass)
UniProt AC (mouse)Q8K557
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 3
Methyl-HT-SELEX 1
PCM
ACGT
011110.251586.252553.251773.25
02750.0766.01960.03547.0
037023.00.00.00.0
040.00.00.07023.0
050.06686.00.0337.0
060.00.07023.00.0
077023.00.00.00.0
080.00.00.07023.0
090.02480.00.04543.0
101716.5604.53818.5883.5
112283.251731.251934.251074.25
PFM
ACGT
010.1580.2260.3640.252
020.1070.1090.2790.505
031.00.00.00.0
040.00.00.01.0
050.00.9520.00.048
060.00.01.00.0
071.00.00.00.0
080.00.00.01.0
090.00.3530.00.647
100.2440.0860.5440.126
110.3250.2470.2750.153
PWM
ACGT
01-0.458-0.1010.3740.01
02-0.849-0.8280.110.703
031.385-6.677-6.677-6.677
04-6.677-6.677-6.6771.385
05-6.6771.336-6.677-1.645
06-6.677-6.6771.385-6.677
071.385-6.677-6.677-6.677
08-6.677-6.677-6.6771.385
09-6.6770.345-6.6770.95
10-0.023-1.0640.776-0.686
110.262-0.0140.097-0.49
Standard thresholds
P-value Threshold
0.001 0.7845
0.0005 1.71196
0.0001 7.43589