| Motif | ONEC3.H12INVIVO.1.S.D |
| Gene (human) | ONECUT3 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Onecut3 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | D |
| Motif | ONEC3.H12INVIVO.1.S.D |
| Gene (human) | ONECUT3 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Onecut3 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | D |
| Motif length | 11 |
| Consensus | nbATCGATTdn |
| GC content | 40.31% |
| Information content (bits; total / per base) | 13.536 / 1.231 |
| Data sources | HT-SELEX |
| Aligned words | 7023 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 4 experiments | median | 0.972 | 0.951 | 0.904 | 0.894 | 0.814 | 0.829 |
| best | 0.99 | 0.981 | 0.987 | 0.977 | 0.981 | 0.96 | |
| Methyl HT-SELEX, 1 experiments | median | 0.97 | 0.95 | 0.977 | 0.954 | 0.981 | 0.96 |
| best | 0.97 | 0.95 | 0.977 | 0.954 | 0.981 | 0.96 | |
| Non-Methyl HT-SELEX, 3 experiments | median | 0.974 | 0.952 | 0.831 | 0.833 | 0.657 | 0.697 |
| best | 0.99 | 0.981 | 0.987 | 0.977 | 0.972 | 0.96 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | HD-CUT {3.1.9} (TFClass) |
| TF subfamily | ONECUT {3.1.9.1} (TFClass) |
| TFClass ID | TFClass: 3.1.9.1.3 |
| HGNC | HGNC:13399 |
| MGI | MGI:1891409 |
| EntrezGene (human) | GeneID:390874 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:246086 (SSTAR profile) |
| UniProt ID (human) | ONEC3_HUMAN |
| UniProt ID (mouse) | ONEC3_MOUSE |
| UniProt AC (human) | O60422 (TFClass) |
| UniProt AC (mouse) | Q8K557 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 3 |
| Methyl-HT-SELEX | 1 |
| PCM | ONEC3.H12INVIVO.1.S.D.pcm |
| PWM | ONEC3.H12INVIVO.1.S.D.pwm |
| PFM | ONEC3.H12INVIVO.1.S.D.pfm |
| Alignment | ONEC3.H12INVIVO.1.S.D.words.tsv |
| Threshold to P-value map | ONEC3.H12INVIVO.1.S.D.thr |
| Motif in other formats | |
| JASPAR format | ONEC3.H12INVIVO.1.S.D_jaspar_format.txt |
| MEME format | ONEC3.H12INVIVO.1.S.D_meme_format.meme |
| Transfac format | ONEC3.H12INVIVO.1.S.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1110.25 | 1586.25 | 2553.25 | 1773.25 |
| 02 | 750.0 | 766.0 | 1960.0 | 3547.0 |
| 03 | 7023.0 | 0.0 | 0.0 | 0.0 |
| 04 | 0.0 | 0.0 | 0.0 | 7023.0 |
| 05 | 0.0 | 6686.0 | 0.0 | 337.0 |
| 06 | 0.0 | 0.0 | 7023.0 | 0.0 |
| 07 | 7023.0 | 0.0 | 0.0 | 0.0 |
| 08 | 0.0 | 0.0 | 0.0 | 7023.0 |
| 09 | 0.0 | 2480.0 | 0.0 | 4543.0 |
| 10 | 1716.5 | 604.5 | 3818.5 | 883.5 |
| 11 | 2283.25 | 1731.25 | 1934.25 | 1074.25 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.158 | 0.226 | 0.364 | 0.252 |
| 02 | 0.107 | 0.109 | 0.279 | 0.505 |
| 03 | 1.0 | 0.0 | 0.0 | 0.0 |
| 04 | 0.0 | 0.0 | 0.0 | 1.0 |
| 05 | 0.0 | 0.952 | 0.0 | 0.048 |
| 06 | 0.0 | 0.0 | 1.0 | 0.0 |
| 07 | 1.0 | 0.0 | 0.0 | 0.0 |
| 08 | 0.0 | 0.0 | 0.0 | 1.0 |
| 09 | 0.0 | 0.353 | 0.0 | 0.647 |
| 10 | 0.244 | 0.086 | 0.544 | 0.126 |
| 11 | 0.325 | 0.247 | 0.275 | 0.153 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.458 | -0.101 | 0.374 | 0.01 |
| 02 | -0.849 | -0.828 | 0.11 | 0.703 |
| 03 | 1.385 | -6.677 | -6.677 | -6.677 |
| 04 | -6.677 | -6.677 | -6.677 | 1.385 |
| 05 | -6.677 | 1.336 | -6.677 | -1.645 |
| 06 | -6.677 | -6.677 | 1.385 | -6.677 |
| 07 | 1.385 | -6.677 | -6.677 | -6.677 |
| 08 | -6.677 | -6.677 | -6.677 | 1.385 |
| 09 | -6.677 | 0.345 | -6.677 | 0.95 |
| 10 | -0.023 | -1.064 | 0.776 | -0.686 |
| 11 | 0.262 | -0.014 | 0.097 | -0.49 |
| P-value | Threshold |
|---|---|
| 0.001 | 0.7845 |
| 0.0005 | 1.71196 |
| 0.0001 | 7.43589 |