MotifOLIG3.H12INVIVO.0.SM.D
Gene (human)OLIG3
(GeneCards)
Gene synonyms (human)BHLHB7, BHLHE20
Gene (mouse)Olig3
Gene synonyms (mouse)Bhlhb7
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length13
ConsensusnRCCATATGTTbn
GC content39.73%
Information content (bits; total / per base)17.361 / 1.335
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words7969

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 8 experiments median 0.996 0.994 0.969 0.964 0.817 0.832
best 1.0 0.999 0.998 0.997 0.965 0.964
Methyl HT-SELEX, 3 experiments median 0.999 0.999 0.977 0.976 0.834 0.838
best 1.0 0.999 0.998 0.997 0.919 0.925
Non-Methyl HT-SELEX, 5 experiments median 0.946 0.936 0.815 0.798 0.701 0.7
best 0.999 0.998 0.998 0.997 0.965 0.964

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.945 0.844 0.929 0.626
batch 2 0.995 0.922 0.936 0.729
TF superclassBasic domains {1} (TFClass)
TF classBasic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF familyTal-related {1.2.3} (TFClass)
TF subfamilyNeurogenin-ATO {1.2.3.4} (TFClass)
TFClass IDTFClass: 1.2.3.4.15
HGNCHGNC:18003
MGIMGI:2149955
EntrezGene (human)GeneID:167826
(SSTAR profile)
EntrezGene (mouse)GeneID:94222
(SSTAR profile)
UniProt ID (human)OLIG3_HUMAN
UniProt ID (mouse)OLIG3_MOUSE
UniProt AC (human)Q7RTU3
(TFClass)
UniProt AC (mouse)Q6PFG8
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 5
Methyl-HT-SELEX 3
PCM
ACGT
011724.02540.01953.01752.0
025441.25141.252022.25364.25
031023.06596.0350.00.0
040.07969.00.00.0
057969.00.00.00.0
060.00.00.07969.0
077969.00.00.00.0
080.00.00.07969.0
090.00.07969.00.0
100.00.03115.04854.0
110.04.00.07965.0
12612.03064.01079.03214.0
131446.52624.51731.52166.5
PFM
ACGT
010.2160.3190.2450.22
020.6830.0180.2540.046
030.1280.8280.0440.0
040.01.00.00.0
051.00.00.00.0
060.00.00.01.0
071.00.00.00.0
080.00.00.01.0
090.00.01.00.0
100.00.00.3910.609
110.00.0010.00.999
120.0770.3840.1350.403
130.1820.3290.2170.272
PWM
ACGT
01-0.1440.243-0.02-0.128
021.004-2.6320.015-1.694
03-0.6651.196-1.734-6.789
04-6.7891.385-6.789-6.789
051.385-6.789-6.789-6.789
06-6.789-6.789-6.7891.385
071.385-6.789-6.789-6.789
08-6.789-6.789-6.7891.385
09-6.789-6.7891.385-6.789
10-6.789-6.7890.4470.89
11-6.789-5.766-6.7891.385
12-1.1780.43-0.6120.478
13-0.320.275-0.140.084
Standard thresholds
P-value Threshold
0.001 -4.380695
0.0005 -2.1492
0.0001 3.062095