Motif | OLIG3.H12CORE.0.SM.B |
Gene (human) | OLIG3 (GeneCards) |
Gene synonyms (human) | BHLHB7, BHLHE20 |
Gene (mouse) | Olig3 |
Gene synonyms (mouse) | Bhlhb7 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | OLIG3.H12CORE.0.SM.B |
Gene (human) | OLIG3 (GeneCards) |
Gene synonyms (human) | BHLHB7, BHLHE20 |
Gene (mouse) | Olig3 |
Gene synonyms (mouse) | Bhlhb7 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 13 |
Consensus | nRCCATATGTTbn |
GC content | 39.73% |
Information content (bits; total / per base) | 17.361 / 1.335 |
Data sources | HT-SELEX + Methyl-HT-SELEX |
Aligned words | 7969 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 8 experiments | median | 0.996 | 0.994 | 0.969 | 0.964 | 0.817 | 0.832 |
best | 1.0 | 0.999 | 0.998 | 0.997 | 0.965 | 0.964 | |
Methyl HT-SELEX, 3 experiments | median | 0.999 | 0.999 | 0.977 | 0.976 | 0.834 | 0.838 |
best | 1.0 | 0.999 | 0.998 | 0.997 | 0.919 | 0.925 | |
Non-Methyl HT-SELEX, 5 experiments | median | 0.946 | 0.936 | 0.815 | 0.798 | 0.701 | 0.7 |
best | 0.999 | 0.998 | 0.998 | 0.997 | 0.965 | 0.964 |
rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
---|---|---|---|---|
batch 1 | 0.945 | 0.844 | 0.929 | 0.626 |
batch 2 | 0.995 | 0.922 | 0.936 | 0.729 |
TF superclass | Basic domains {1} (TFClass) |
TF class | Basic helix-loop-helix factors (bHLH) {1.2} (TFClass) |
TF family | Tal-related {1.2.3} (TFClass) |
TF subfamily | Neurogenin-ATO {1.2.3.4} (TFClass) |
TFClass ID | TFClass: 1.2.3.4.15 |
HGNC | HGNC:18003 |
MGI | MGI:2149955 |
EntrezGene (human) | GeneID:167826 (SSTAR profile) |
EntrezGene (mouse) | GeneID:94222 (SSTAR profile) |
UniProt ID (human) | OLIG3_HUMAN |
UniProt ID (mouse) | OLIG3_MOUSE |
UniProt AC (human) | Q7RTU3 (TFClass) |
UniProt AC (mouse) | Q6PFG8 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 5 |
Methyl-HT-SELEX | 3 |
PCM | OLIG3.H12CORE.0.SM.B.pcm |
PWM | OLIG3.H12CORE.0.SM.B.pwm |
PFM | OLIG3.H12CORE.0.SM.B.pfm |
Alignment | OLIG3.H12CORE.0.SM.B.words.tsv |
Threshold to P-value map | OLIG3.H12CORE.0.SM.B.thr |
Motif in other formats | |
JASPAR format | OLIG3.H12CORE.0.SM.B_jaspar_format.txt |
MEME format | OLIG3.H12CORE.0.SM.B_meme_format.meme |
Transfac format | OLIG3.H12CORE.0.SM.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 1724.0 | 2540.0 | 1953.0 | 1752.0 |
02 | 5441.25 | 141.25 | 2022.25 | 364.25 |
03 | 1023.0 | 6596.0 | 350.0 | 0.0 |
04 | 0.0 | 7969.0 | 0.0 | 0.0 |
05 | 7969.0 | 0.0 | 0.0 | 0.0 |
06 | 0.0 | 0.0 | 0.0 | 7969.0 |
07 | 7969.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 0.0 | 0.0 | 7969.0 |
09 | 0.0 | 0.0 | 7969.0 | 0.0 |
10 | 0.0 | 0.0 | 3115.0 | 4854.0 |
11 | 0.0 | 4.0 | 0.0 | 7965.0 |
12 | 612.0 | 3064.0 | 1079.0 | 3214.0 |
13 | 1446.5 | 2624.5 | 1731.5 | 2166.5 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.216 | 0.319 | 0.245 | 0.22 |
02 | 0.683 | 0.018 | 0.254 | 0.046 |
03 | 0.128 | 0.828 | 0.044 | 0.0 |
04 | 0.0 | 1.0 | 0.0 | 0.0 |
05 | 1.0 | 0.0 | 0.0 | 0.0 |
06 | 0.0 | 0.0 | 0.0 | 1.0 |
07 | 1.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 0.0 | 0.0 | 1.0 |
09 | 0.0 | 0.0 | 1.0 | 0.0 |
10 | 0.0 | 0.0 | 0.391 | 0.609 |
11 | 0.0 | 0.001 | 0.0 | 0.999 |
12 | 0.077 | 0.384 | 0.135 | 0.403 |
13 | 0.182 | 0.329 | 0.217 | 0.272 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.144 | 0.243 | -0.02 | -0.128 |
02 | 1.004 | -2.632 | 0.015 | -1.694 |
03 | -0.665 | 1.196 | -1.734 | -6.789 |
04 | -6.789 | 1.385 | -6.789 | -6.789 |
05 | 1.385 | -6.789 | -6.789 | -6.789 |
06 | -6.789 | -6.789 | -6.789 | 1.385 |
07 | 1.385 | -6.789 | -6.789 | -6.789 |
08 | -6.789 | -6.789 | -6.789 | 1.385 |
09 | -6.789 | -6.789 | 1.385 | -6.789 |
10 | -6.789 | -6.789 | 0.447 | 0.89 |
11 | -6.789 | -5.766 | -6.789 | 1.385 |
12 | -1.178 | 0.43 | -0.612 | 0.478 |
13 | -0.32 | 0.275 | -0.14 | 0.084 |
P-value | Threshold |
---|---|
0.001 | -4.380695 |
0.0005 | -2.1492 |
0.0001 | 3.062095 |