OLIG1.H12RSNP.0.S.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	OLIG1.H12RSNP.0.S.D
Gene (human)	OLIG1 (GeneCards)
Gene synonyms (human)	BHLHB6, BHLHE21
Gene (mouse)	Olig1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	16
Consensus	nnnnvAMCATATGKYn
GC content	37.66%
Information content (bits; total / per base)	16.199 / 1.012
Data sources	HT-SELEX
Aligned words	2239

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Non-Methyl HT-SELEX, 2 experiments	median	0.954	0.952	0.837	0.844	0.693	0.719
Non-Methyl HT-SELEX, 2 experiments	best	0.999	0.999	0.941	0.944	0.759	0.79

TF superclass	Basic domains {1} (TFClass)
TF class	Basic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF family	Tal-related {1.2.3} (TFClass)
TF subfamily	Neurogenin-ATO {1.2.3.4} (TFClass)
TFClass ID	TFClass: 1.2.3.4.13
HGNC	HGNC:16983
MGI	MGI:1355334
EntrezGene (human)	GeneID:116448 (SSTAR profile)
EntrezGene (mouse)	GeneID:50914 (SSTAR profile)
UniProt ID (human)	OLIG1_HUMAN
UniProt ID (mouse)	OLIG1_MOUSE
UniProt AC (human)	Q8TAK6 (TFClass)
UniProt AC (mouse)	Q9JKN5 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	2
Methyl-HT-SELEX	0

PCM	OLIG1.H12RSNP.0.S.D.pcm
PWM	OLIG1.H12RSNP.0.S.D.pwm
PFM	OLIG1.H12RSNP.0.S.D.pfm
Alignment	OLIG1.H12RSNP.0.S.D.words.tsv
Threshold to P-value map	OLIG1.H12RSNP.0.S.D.thr
Motif in other formats
JASPAR format	OLIG1.H12RSNP.0.S.D_jaspar_format.txt
MEME format	OLIG1.H12RSNP.0.S.D_meme_format.meme
Transfac format	OLIG1.H12RSNP.0.S.D_transfac_format.txt
Homer format	OLIG1.H12RSNP.0.S.D_homer_format_0.001.txt OLIG1.H12RSNP.0.S.D_homer_format_0.0005.txt OLIG1.H12RSNP.0.S.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	708.5	437.5	564.5	528.5
02	737.75	420.75	655.75	424.75
03	843.0	412.0	593.0	391.0
04	817.0	394.0	517.0	511.0
05	1132.0	341.0	508.0	258.0
06	2086.0	11.0	128.0	14.0
07	1258.0	877.0	104.0	0.0
08	0.0	2239.0	0.0	0.0
09	2239.0	0.0	0.0	0.0
10	0.0	0.0	0.0	2239.0
11	2239.0	0.0	0.0	0.0
12	0.0	0.0	0.0	2239.0
13	0.0	0.0	2239.0	0.0
14	3.0	259.0	1154.0	823.0
15	88.25	590.25	69.25	1491.25
16	613.0	503.0	476.0	647.0

PFM

	A	C	G	T
01	0.316	0.195	0.252	0.236
02	0.329	0.188	0.293	0.19
03	0.377	0.184	0.265	0.175
04	0.365	0.176	0.231	0.228
05	0.506	0.152	0.227	0.115
06	0.932	0.005	0.057	0.006
07	0.562	0.392	0.046	0.0
08	0.0	1.0	0.0	0.0
09	1.0	0.0	0.0	0.0
10	0.0	0.0	0.0	1.0
11	1.0	0.0	0.0	0.0
12	0.0	0.0	0.0	1.0
13	0.0	0.0	1.0	0.0
14	0.001	0.116	0.515	0.368
15	0.039	0.264	0.031	0.666
16	0.274	0.225	0.213	0.289

PWM

	A	C	G	T
01	0.235	-0.245	0.008	-0.057
02	0.275	-0.284	0.158	-0.275
03	0.408	-0.305	0.058	-0.357
04	0.377	-0.35	-0.079	-0.091
05	0.703	-0.493	-0.097	-0.771
06	1.313	-3.771	-1.464	-3.563
07	0.808	0.448	-1.668	-5.674
08	-5.674	1.384	-5.674	-5.674
09	1.384	-5.674	-5.674	-5.674
10	-5.674	-5.674	-5.674	1.384
11	1.384	-5.674	-5.674	-5.674
12	-5.674	-5.674	-5.674	1.384
13	-5.674	-5.674	1.384	-5.674
14	-4.736	-0.767	0.722	0.384
15	-1.829	0.053	-2.066	0.978
16	0.091	-0.107	-0.161	0.144

Standard thresholds

P-value	Threshold
0.001	-0.41324
0.0005	1.57476
0.0001	4.93891