MotifNR6A1.H12INVIVO.0.P.C
Gene (human)NR6A1
(GeneCards)
Gene synonyms (human)GCNF
Gene (mouse)Nr6a1
Gene synonyms (mouse)Gcnf
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length14
ConsensusvRRRbYCAAGKbYW
GC content47.25%
Information content (bits; total / per base)11.538 / 0.824
Data sourcesChIP-Seq
Aligned words997

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 1 (5) 0.792 0.809 0.692 0.718 0.772 0.784 3.176 3.277 177.26 204.886

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.98 0.981 0.776 0.805 0.626 0.675
best 1.0 1.0 0.817 0.843 0.643 0.697
Methyl HT-SELEX, 1 experiments median 1.0 1.0 0.817 0.843 0.643 0.697
best 1.0 1.0 0.817 0.843 0.643 0.697
Non-Methyl HT-SELEX, 1 experiments median 0.961 0.962 0.736 0.767 0.608 0.652
best 0.961 0.962 0.736 0.767 0.608 0.652
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classNuclear receptors with C4 zinc fingers {2.1} (TFClass)
TF familyGCNF (NR6) {2.1.6} (TFClass)
TF subfamily {2.1.6.0} (TFClass)
TFClass IDTFClass: 2.1.6.0.1
HGNCHGNC:7985
MGIMGI:1352459
EntrezGene (human)GeneID:2649
(SSTAR profile)
EntrezGene (mouse)GeneID:14536
(SSTAR profile)
UniProt ID (human)NR6A1_HUMAN
UniProt ID (mouse)NR6A1_MOUSE
UniProt AC (human)Q15406
(TFClass)
UniProt AC (mouse)Q64249
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 1 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
01211.0467.0191.0128.0
02594.081.0188.0134.0
03608.099.0166.0124.0
04181.066.0591.0159.0
0557.096.0445.0399.0
0631.0343.037.0586.0
0710.0949.021.017.0
08965.015.05.012.0
09891.018.033.055.0
1067.011.0879.040.0
1131.025.0557.0384.0
1256.0245.0148.0548.0
1332.0761.033.0171.0
14773.039.086.099.0
PFM
ACGT
010.2120.4680.1920.128
020.5960.0810.1890.134
030.610.0990.1660.124
040.1820.0660.5930.159
050.0570.0960.4460.4
060.0310.3440.0370.588
070.010.9520.0210.017
080.9680.0150.0050.012
090.8940.0180.0330.055
100.0670.0110.8820.04
110.0310.0250.5590.385
120.0560.2460.1480.55
130.0320.7630.0330.172
140.7750.0390.0860.099
PWM
ACGT
01-0.1650.625-0.264-0.66
020.864-1.11-0.28-0.615
030.888-0.913-0.403-0.691
04-0.317-1.310.859-0.446
05-1.452-0.9430.5770.468
06-2.0370.317-1.8690.851
07-3.0641.332-2.402-2.595
081.349-2.708-3.619-2.906
091.269-2.543-1.978-1.487
10-1.295-2.9821.255-1.794
11-2.037-2.240.80.43
12-1.47-0.017-0.5170.784
13-2.0071.112-1.978-0.374
141.127-1.818-1.051-0.913
Standard thresholds
P-value Threshold
0.001 4.34671
0.0005 5.26046
0.0001 7.15131