Motif | NR2F6.H12INVITRO.0.P.C |
Gene (human) | NR2F6 (GeneCards) |
Gene synonyms (human) | EAR2, ERBAL2 |
Gene (mouse) | Nr2f6 |
Gene synonyms (mouse) | Ear-2, Ear2, Erbal2 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | C |
Motif | NR2F6.H12INVITRO.0.P.C |
Gene (human) | NR2F6 (GeneCards) |
Gene synonyms (human) | EAR2, ERBAL2 |
Gene (mouse) | Nr2f6 |
Gene synonyms (mouse) | Ear-2, Ear2, Erbal2 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | C |
Motif length | 14 |
Consensus | dddvbvWRAGGTCA |
GC content | 52.66% |
Information content (bits; total / per base) | 11.966 / 0.855 |
Data sources | ChIP-Seq |
Aligned words | 1000 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 3 (21) | 0.894 | 0.907 | 0.808 | 0.83 | 0.877 | 0.891 | 3.418 | 3.687 | 218.495 | 291.796 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 11 experiments | median | 0.927 | 0.9 | 0.844 | 0.813 | 0.73 | 0.72 |
best | 0.999 | 0.999 | 0.992 | 0.991 | 0.977 | 0.968 | |
Methyl HT-SELEX, 3 experiments | median | 0.992 | 0.988 | 0.985 | 0.977 | 0.965 | 0.956 |
best | 0.997 | 0.997 | 0.99 | 0.986 | 0.97 | 0.957 | |
Non-Methyl HT-SELEX, 8 experiments | median | 0.795 | 0.796 | 0.656 | 0.67 | 0.574 | 0.599 |
best | 0.999 | 0.999 | 0.992 | 0.991 | 0.977 | 0.968 |
TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
TF class | Nuclear receptors with C4 zinc fingers {2.1} (TFClass) |
TF family | RXR-related receptors {2.1.3} (TFClass) |
TF subfamily | COUP (NR2F) {2.1.3.5} (TFClass) |
TFClass ID | TFClass: 2.1.3.5.3 |
HGNC | HGNC:7977 |
MGI | MGI:1352453 |
EntrezGene (human) | GeneID:2063 (SSTAR profile) |
EntrezGene (mouse) | GeneID:13864 (SSTAR profile) |
UniProt ID (human) | NR2F6_HUMAN |
UniProt ID (mouse) | NR2F6_MOUSE |
UniProt AC (human) | P10588 (TFClass) |
UniProt AC (mouse) | P43136 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 3 human, 0 mouse |
HT-SELEX | 8 |
Methyl-HT-SELEX | 3 |
PCM | NR2F6.H12INVITRO.0.P.C.pcm |
PWM | NR2F6.H12INVITRO.0.P.C.pwm |
PFM | NR2F6.H12INVITRO.0.P.C.pfm |
Alignment | NR2F6.H12INVITRO.0.P.C.words.tsv |
Threshold to P-value map | NR2F6.H12INVITRO.0.P.C.thr |
Motif in other formats | |
JASPAR format | NR2F6.H12INVITRO.0.P.C_jaspar_format.txt |
MEME format | NR2F6.H12INVITRO.0.P.C_meme_format.meme |
Transfac format | NR2F6.H12INVITRO.0.P.C_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 271.0 | 140.0 | 424.0 | 165.0 |
02 | 430.0 | 98.0 | 336.0 | 136.0 |
03 | 176.0 | 131.0 | 536.0 | 157.0 |
04 | 162.0 | 197.0 | 492.0 | 149.0 |
05 | 139.0 | 252.0 | 192.0 | 417.0 |
06 | 153.0 | 573.0 | 145.0 | 129.0 |
07 | 716.0 | 95.0 | 83.0 | 106.0 |
08 | 472.0 | 52.0 | 436.0 | 40.0 |
09 | 819.0 | 1.0 | 179.0 | 1.0 |
10 | 6.0 | 0.0 | 988.0 | 6.0 |
11 | 17.0 | 6.0 | 961.0 | 16.0 |
12 | 1.0 | 34.0 | 54.0 | 911.0 |
13 | 3.0 | 900.0 | 30.0 | 67.0 |
14 | 947.0 | 17.0 | 21.0 | 15.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.271 | 0.14 | 0.424 | 0.165 |
02 | 0.43 | 0.098 | 0.336 | 0.136 |
03 | 0.176 | 0.131 | 0.536 | 0.157 |
04 | 0.162 | 0.197 | 0.492 | 0.149 |
05 | 0.139 | 0.252 | 0.192 | 0.417 |
06 | 0.153 | 0.573 | 0.145 | 0.129 |
07 | 0.716 | 0.095 | 0.083 | 0.106 |
08 | 0.472 | 0.052 | 0.436 | 0.04 |
09 | 0.819 | 0.001 | 0.179 | 0.001 |
10 | 0.006 | 0.0 | 0.988 | 0.006 |
11 | 0.017 | 0.006 | 0.961 | 0.016 |
12 | 0.001 | 0.034 | 0.054 | 0.911 |
13 | 0.003 | 0.9 | 0.03 | 0.067 |
14 | 0.947 | 0.017 | 0.021 | 0.015 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.08 | -0.574 | 0.525 | -0.412 |
02 | 0.539 | -0.926 | 0.294 | -0.603 |
03 | -0.348 | -0.64 | 0.759 | -0.461 |
04 | -0.43 | -0.236 | 0.674 | -0.513 |
05 | -0.582 | 0.008 | -0.262 | 0.509 |
06 | -0.487 | 0.826 | -0.54 | -0.655 |
07 | 1.048 | -0.956 | -1.089 | -0.849 |
08 | 0.632 | -1.544 | 0.553 | -1.797 |
09 | 1.182 | -4.525 | -0.331 | -4.525 |
10 | -3.484 | -4.982 | 1.369 | -3.484 |
11 | -2.598 | -3.484 | 1.341 | -2.653 |
12 | -4.525 | -1.952 | -1.508 | 1.288 |
13 | -3.975 | 1.276 | -2.071 | -1.298 |
14 | 1.327 | -2.598 | -2.405 | -2.711 |
P-value | Threshold |
---|---|
0.001 | 4.16621 |
0.0005 | 5.17386 |
0.0001 | 7.23996 |