| Motif | NR1H4.H12INVITRO.2.P.D |
| Gene (human) | NR1H4 (GeneCards) |
| Gene synonyms (human) | BAR, FXR, HRR1, RIP14 |
| Gene (mouse) | Nr1h4 |
| Gene synonyms (mouse) | Bar, Fxr, Rip14 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 2 |
| Quality | D |
| Motif | NR1H4.H12INVITRO.2.P.D |
| Gene (human) | NR1H4 (GeneCards) |
| Gene synonyms (human) | BAR, FXR, HRR1, RIP14 |
| Gene (mouse) | Nr1h4 |
| Gene synonyms (mouse) | Bar, Fxr, Rip14 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 2 |
| Quality | D |
| Motif length | 7 |
| Consensus | RvTGACC |
| GC content | 56.27% |
| Information content (bits; total / per base) | 8.003 / 1.143 |
| Data sources | ChIP-Seq |
| Aligned words | 971 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 2 (14) | 0.823 | 0.836 | 0.691 | 0.7 | 0.737 | 0.748 | 1.784 | 1.821 | 123.148 | 140.699 |
| Mouse | 4 (20) | 0.746 | 0.764 | 0.608 | 0.634 | 0.648 | 0.675 | 1.477 | 1.591 | 142.653 | 173.824 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | Nuclear receptors with C4 zinc fingers {2.1} (TFClass) |
| TF family | Thyroid hormone receptor-related {2.1.2} (TFClass) |
| TF subfamily | LXR (NR1H) {2.1.2.7} (TFClass) |
| TFClass ID | TFClass: 2.1.2.7.3 |
| HGNC | HGNC:7967 |
| MGI | MGI:1352464 |
| EntrezGene (human) | GeneID:9971 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:20186 (SSTAR profile) |
| UniProt ID (human) | NR1H4_HUMAN |
| UniProt ID (mouse) | NR1H4_MOUSE |
| UniProt AC (human) | Q96RI1 (TFClass) |
| UniProt AC (mouse) | Q60641 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 2 human, 4 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | NR1H4.H12INVITRO.2.P.D.pcm |
| PWM | NR1H4.H12INVITRO.2.P.D.pwm |
| PFM | NR1H4.H12INVITRO.2.P.D.pfm |
| Alignment | NR1H4.H12INVITRO.2.P.D.words.tsv |
| Threshold to P-value map | NR1H4.H12INVITRO.2.P.D.thr |
| Motif in other formats | |
| JASPAR format | NR1H4.H12INVITRO.2.P.D_jaspar_format.txt |
| MEME format | NR1H4.H12INVITRO.2.P.D_meme_format.meme |
| Transfac format | NR1H4.H12INVITRO.2.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 583.0 | 118.0 | 219.0 | 51.0 |
| 02 | 262.0 | 376.0 | 224.0 | 109.0 |
| 03 | 13.0 | 17.0 | 3.0 | 938.0 |
| 04 | 13.0 | 20.0 | 937.0 | 1.0 |
| 05 | 783.0 | 41.0 | 124.0 | 23.0 |
| 06 | 97.0 | 864.0 | 8.0 | 2.0 |
| 07 | 73.0 | 872.0 | 2.0 | 24.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.6 | 0.122 | 0.226 | 0.053 |
| 02 | 0.27 | 0.387 | 0.231 | 0.112 |
| 03 | 0.013 | 0.018 | 0.003 | 0.966 |
| 04 | 0.013 | 0.021 | 0.965 | 0.001 |
| 05 | 0.806 | 0.042 | 0.128 | 0.024 |
| 06 | 0.1 | 0.89 | 0.008 | 0.002 |
| 07 | 0.075 | 0.898 | 0.002 | 0.025 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.872 | -0.714 | -0.102 | -1.534 |
| 02 | 0.076 | 0.435 | -0.08 | -0.792 |
| 03 | -2.81 | -2.57 | -3.947 | 1.346 |
| 04 | -2.81 | -2.421 | 1.345 | -4.499 |
| 05 | 1.166 | -1.744 | -0.665 | -2.291 |
| 06 | -0.907 | 1.264 | -3.225 | -4.185 |
| 07 | -1.185 | 1.274 | -4.185 | -2.252 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.21512 |
| 0.0005 | 5.833365 |
| 0.0001 | 7.29239 |