MotifNR1D2.H12INVITRO.1.SM.B
Gene (human)NR1D2
(GeneCards)
Gene synonyms (human)
Gene (mouse)Nr1d2
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
B
Motif length17
ConsensusnbAGGTCAGTRGGTCRn
GC content54.93%
Information content (bits; total / per base)20.541 / 1.208
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9974

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 2 (12) 0.691 0.776 0.581 0.693 0.668 0.754 2.299 2.873 76.615 141.0

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 1.0 1.0 0.966 0.968 0.798 0.821
best 1.0 1.0 0.975 0.975 0.814 0.834
Methyl HT-SELEX, 1 experiments median 1.0 1.0 0.958 0.961 0.782 0.809
best 1.0 1.0 0.958 0.961 0.782 0.809
Non-Methyl HT-SELEX, 1 experiments median 1.0 1.0 0.975 0.975 0.814 0.834
best 1.0 1.0 0.975 0.975 0.814 0.834
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classNuclear receptors with C4 zinc fingers {2.1} (TFClass)
TF familyThyroid hormone receptor-related {2.1.2} (TFClass)
TF subfamilyREVERBA (NR1D) {2.1.2.3} (TFClass)
TFClass IDTFClass: 2.1.2.3.2
HGNCHGNC:7963
MGIMGI:2449205
EntrezGene (human)GeneID:9975
(SSTAR profile)
EntrezGene (mouse)GeneID:353187
(SSTAR profile)
UniProt ID (human)NR1D2_HUMAN
UniProt ID (mouse)NR1D2_MOUSE
UniProt AC (human)Q14995
(TFClass)
UniProt AC (mouse)Q60674
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 2 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
011901.52018.53843.52210.5
021234.51503.51921.55314.5
037054.069.02801.050.0
0441.041.09682.0210.0
0535.021.09882.036.0
0642.069.0536.09327.0
0793.07157.050.02674.0
089852.06.093.023.0
09315.0767.08676.0216.0
1032.0170.0189.09583.0
115372.021.04559.022.0
1240.014.09556.0364.0
1387.045.09794.048.0
14239.0341.0980.08414.0
1559.09245.0179.0491.0
166371.5376.52820.5405.5
172269.752546.753156.752000.75
PFM
ACGT
010.1910.2020.3850.222
020.1240.1510.1930.533
030.7070.0070.2810.005
040.0040.0040.9710.021
050.0040.0020.9910.004
060.0040.0070.0540.935
070.0090.7180.0050.268
080.9880.0010.0090.002
090.0320.0770.870.022
100.0030.0170.0190.961
110.5390.0020.4570.002
120.0040.0010.9580.036
130.0090.0050.9820.005
140.0240.0340.0980.844
150.0060.9270.0180.049
160.6390.0380.2830.041
170.2280.2550.3160.201
PWM
ACGT
01-0.271-0.2110.432-0.12
02-0.702-0.505-0.260.756
031.039-3.5550.116-3.865
04-4.054-4.0541.356-2.464
05-4.203-4.6741.376-4.177
06-4.031-3.555-1.5341.319
07-3.2651.054-3.8650.07
081.373-5.706-3.265-4.591
09-2.063-1.1771.246-2.436
10-4.287-2.673-2.5691.346
110.767-4.6740.603-4.632
12-4.078-5.0311.343-1.919
13-3.33-3.9661.367-3.904
14-2.336-1.984-0.9321.216
15-3.7071.31-2.622-1.621
160.938-1.8850.123-1.812
17-0.0940.0210.236-0.22
Standard thresholds
P-value Threshold
0.001 -1.20284
0.0005 0.40641
0.0001 3.80981