MotifNPAS4.H12INVIVO.0.P.B
Gene (human)NPAS4
(GeneCards)
Gene synonyms (human)BHLHE79, NXF, PASD10
Gene (mouse)Npas4
Gene synonyms (mouse)Nxf
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length11
ConsensusdvnKCGTGMbb
GC content55.72%
Information content (bits; total / per base)9.484 / 0.862
Data sourcesChIP-Seq
Aligned words998

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 6 (33) 0.893 0.929 0.813 0.851 0.794 0.858 2.595 2.843 157.432 231.854
TF superclassBasic domains {1} (TFClass)
TF classBasic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF familyPAS {1.2.5} (TFClass)
TF subfamilyNPAS4 {1.2.5.4} (TFClass)
TFClass IDTFClass: 1.2.5.4.1
HGNCHGNC:18983
MGIMGI:2664186
EntrezGene (human)GeneID:266743
(SSTAR profile)
EntrezGene (mouse)GeneID:225872
(SSTAR profile)
UniProt ID (human)NPAS4_HUMAN
UniProt ID (mouse)NPAS4_MOUSE
UniProt AC (human)Q8IUM7
(TFClass)
UniProt AC (mouse)Q8BGD7
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 6 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01258.0148.0435.0157.0
02374.0250.0256.0118.0
03301.0130.0331.0236.0
0458.061.0199.0680.0
051.0987.06.04.0
0614.04.0979.01.0
072.01.01.0994.0
080.03.0992.03.0
09576.0251.015.0156.0
1088.0472.0197.0241.0
11186.0208.0191.0413.0
PFM
ACGT
010.2590.1480.4360.157
020.3750.2510.2570.118
030.3020.130.3320.236
040.0580.0610.1990.681
050.0010.9890.0060.004
060.0140.0040.9810.001
070.0020.0010.0010.996
080.00.0030.9940.003
090.5770.2520.0150.156
100.0880.4730.1970.241
110.1860.2080.1910.414
PWM
ACGT
010.033-0.5180.553-0.459
020.4030.0020.026-0.741
030.186-0.6460.281-0.055
04-1.437-1.388-0.2240.998
05-4.5231.37-3.482-3.781
06-2.771-3.7811.362-4.523
07-4.211-4.523-4.5231.377
08-4.98-3.9731.375-3.973
090.8330.006-2.709-0.465
10-1.030.634-0.234-0.034
11-0.291-0.181-0.2650.501
Standard thresholds
P-value Threshold
0.001 5.252965
0.0005 6.117995
0.0001 7.45254