MotifNPAS3.H12INVIVO.0.P.C
Gene (human)NPAS3
(GeneCards)
Gene synonyms (human)BHLHE12, MOP6, PASD6
Gene (mouse)Npas3
Gene synonyms (mouse)Mop6
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length11
ConsensusvdRCGTGMbbd
GC content60.0%
Information content (bits; total / per base)9.233 / 0.839
Data sourcesChIP-Seq
Aligned words996

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 1 (7) 0.837 0.839 0.758 0.764 0.787 0.8 2.637 2.7 188.367 198.721
TF superclassBasic domains {1} (TFClass)
TF classBasic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF familyPAS {1.2.5} (TFClass)
TF subfamilyPAS-AHR {1.2.5.1} (TFClass)
TFClass IDTFClass: 1.2.5.1.9
HGNCHGNC:19311
MGIMGI:1351610
EntrezGene (human)GeneID:64067
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)NPAS3_HUMAN
UniProt ID (mouse)NPAS3_MOUSE
UniProt AC (human)Q8IXF0
(TFClass)
UniProt AC (mouse)Q9QZQ0
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 1 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01162.0188.0579.067.0
02168.075.0396.0357.0
03755.039.0182.020.0
0446.0843.012.095.0
0537.06.0941.012.0
063.02.00.0991.0
071.00.0994.01.0
08339.0533.055.069.0
0998.0444.0189.0265.0
1099.0327.0220.0350.0
11198.0148.0401.0249.0
PFM
ACGT
010.1630.1890.5810.067
020.1690.0750.3980.358
030.7580.0390.1830.02
040.0460.8460.0120.095
050.0370.0060.9450.012
060.0030.0020.00.995
070.0010.00.9980.001
080.340.5350.0550.069
090.0980.4460.190.266
100.0990.3280.2210.351
110.1990.1490.4030.25
PWM
ACGT
01-0.426-0.2790.84-1.294
02-0.39-1.1840.4610.358
031.105-1.817-0.311-2.446
04-1.6591.215-2.905-0.952
05-1.868-3.481.324-2.905
06-3.971-4.209-4.9791.376
07-4.522-4.9791.379-4.522
080.3070.757-1.486-1.266
09-0.9220.575-0.2740.062
10-0.9120.271-0.1230.338
11-0.227-0.5160.4740.0
Standard thresholds
P-value Threshold
0.001 5.050515
0.0005 5.86886
0.0001 7.371375