| Motif | NPAS3.H12INVITRO.0.P.D |
| Gene (human) | NPAS3 (GeneCards) |
| Gene synonyms (human) | BHLHE12, MOP6, PASD6 |
| Gene (mouse) | Npas3 |
| Gene synonyms (mouse) | Mop6 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | NPAS3.H12INVITRO.0.P.D |
| Gene (human) | NPAS3 (GeneCards) |
| Gene synonyms (human) | BHLHE12, MOP6, PASD6 |
| Gene (mouse) | Npas3 |
| Gene synonyms (mouse) | Mop6 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 11 |
| Consensus | vdRCGTGMbbd |
| GC content | 60.0% |
| Information content (bits; total / per base) | 9.233 / 0.839 |
| Data sources | ChIP-Seq |
| Aligned words | 996 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mouse | 1 (7) | 0.837 | 0.839 | 0.758 | 0.764 | 0.787 | 0.8 | 2.637 | 2.7 | 188.367 | 198.721 |
| TF superclass | Basic domains {1} (TFClass) |
| TF class | Basic helix-loop-helix factors (bHLH) {1.2} (TFClass) |
| TF family | PAS {1.2.5} (TFClass) |
| TF subfamily | PAS-AHR {1.2.5.1} (TFClass) |
| TFClass ID | TFClass: 1.2.5.1.9 |
| HGNC | HGNC:19311 |
| MGI | MGI:1351610 |
| EntrezGene (human) | GeneID:64067 (SSTAR profile) |
| EntrezGene (mouse) | |
| UniProt ID (human) | NPAS3_HUMAN |
| UniProt ID (mouse) | NPAS3_MOUSE |
| UniProt AC (human) | Q8IXF0 (TFClass) |
| UniProt AC (mouse) | Q9QZQ0 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 1 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | NPAS3.H12INVITRO.0.P.D.pcm |
| PWM | NPAS3.H12INVITRO.0.P.D.pwm |
| PFM | NPAS3.H12INVITRO.0.P.D.pfm |
| Alignment | NPAS3.H12INVITRO.0.P.D.words.tsv |
| Threshold to P-value map | NPAS3.H12INVITRO.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | NPAS3.H12INVITRO.0.P.D_jaspar_format.txt |
| MEME format | NPAS3.H12INVITRO.0.P.D_meme_format.meme |
| Transfac format | NPAS3.H12INVITRO.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 162.0 | 188.0 | 579.0 | 67.0 |
| 02 | 168.0 | 75.0 | 396.0 | 357.0 |
| 03 | 755.0 | 39.0 | 182.0 | 20.0 |
| 04 | 46.0 | 843.0 | 12.0 | 95.0 |
| 05 | 37.0 | 6.0 | 941.0 | 12.0 |
| 06 | 3.0 | 2.0 | 0.0 | 991.0 |
| 07 | 1.0 | 0.0 | 994.0 | 1.0 |
| 08 | 339.0 | 533.0 | 55.0 | 69.0 |
| 09 | 98.0 | 444.0 | 189.0 | 265.0 |
| 10 | 99.0 | 327.0 | 220.0 | 350.0 |
| 11 | 198.0 | 148.0 | 401.0 | 249.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.163 | 0.189 | 0.581 | 0.067 |
| 02 | 0.169 | 0.075 | 0.398 | 0.358 |
| 03 | 0.758 | 0.039 | 0.183 | 0.02 |
| 04 | 0.046 | 0.846 | 0.012 | 0.095 |
| 05 | 0.037 | 0.006 | 0.945 | 0.012 |
| 06 | 0.003 | 0.002 | 0.0 | 0.995 |
| 07 | 0.001 | 0.0 | 0.998 | 0.001 |
| 08 | 0.34 | 0.535 | 0.055 | 0.069 |
| 09 | 0.098 | 0.446 | 0.19 | 0.266 |
| 10 | 0.099 | 0.328 | 0.221 | 0.351 |
| 11 | 0.199 | 0.149 | 0.403 | 0.25 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.426 | -0.279 | 0.84 | -1.294 |
| 02 | -0.39 | -1.184 | 0.461 | 0.358 |
| 03 | 1.105 | -1.817 | -0.311 | -2.446 |
| 04 | -1.659 | 1.215 | -2.905 | -0.952 |
| 05 | -1.868 | -3.48 | 1.324 | -2.905 |
| 06 | -3.971 | -4.209 | -4.979 | 1.376 |
| 07 | -4.522 | -4.979 | 1.379 | -4.522 |
| 08 | 0.307 | 0.757 | -1.486 | -1.266 |
| 09 | -0.922 | 0.575 | -0.274 | 0.062 |
| 10 | -0.912 | 0.271 | -0.123 | 0.338 |
| 11 | -0.227 | -0.516 | 0.474 | 0.0 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.050515 |
| 0.0005 | 5.86886 |
| 0.0001 | 7.371375 |