MotifNOTO.H12INVIVO.0.SM.D
Gene (human)NOTO
(GeneCards)
Gene synonyms (human)
Gene (mouse)Noto
Gene synonyms (mouse)Not
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length13
ConsensusnvbYMATTAvbnn
GC content40.24%
Information content (bits; total / per base)9.813 / 0.755
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9834

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 3 experiments median 0.95 0.918 0.914 0.873 0.865 0.823
best 0.955 0.931 0.93 0.892 0.895 0.854
Methyl HT-SELEX, 1 experiments median 0.941 0.906 0.914 0.873 0.865 0.823
best 0.941 0.906 0.914 0.873 0.865 0.823
Non-Methyl HT-SELEX, 2 experiments median 0.953 0.925 0.903 0.872 0.812 0.795
best 0.955 0.931 0.93 0.892 0.895 0.854
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyNK-related {3.1.2} (TFClass)
TF subfamilyNOTO {3.1.2.20} (TFClass)
TFClass IDTFClass: 3.1.2.20.1
HGNCHGNC:31839
MGIMGI:3053002
EntrezGene (human)GeneID:344022
(SSTAR profile)
EntrezGene (mouse)GeneID:384452
(SSTAR profile)
UniProt ID (human)NOTO_HUMAN
UniProt ID (mouse)NOTO_MOUSE
UniProt AC (human)A8MTQ0
(TFClass)
UniProt AC (mouse)Q5TIS6
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 2
Methyl-HT-SELEX 1
PCM
ACGT
012871.752685.752280.751995.75
021868.753969.752339.751655.75
031039.05719.01374.01702.0
041169.02117.0528.06020.0
054133.05357.00.0344.0
069583.00.0251.00.0
070.05.00.09829.0
081.0206.034.09593.0
099533.022.0105.0174.0
103402.01984.04030.0418.0
11662.04511.02519.02142.0
121509.252934.253283.252107.25
132208.03234.01951.02441.0
PFM
ACGT
010.2920.2730.2320.203
020.190.4040.2380.168
030.1060.5820.140.173
040.1190.2150.0540.612
050.420.5450.00.035
060.9740.00.0260.0
070.00.0010.00.999
080.00.0210.0030.975
090.9690.0020.0110.018
100.3460.2020.410.043
110.0670.4590.2560.218
120.1530.2980.3340.214
130.2250.3290.1980.248
PWM
ACGT
010.1550.088-0.075-0.208
02-0.2740.479-0.049-0.395
03-0.860.844-0.581-0.367
04-0.742-0.149-1.5350.895
050.5190.778-6.976-1.961
061.36-6.976-2.274-6.976
07-6.976-5.821-6.9761.385
08-6.615-2.469-4.2161.361
091.355-4.618-3.133-2.636
100.325-0.2140.494-1.767
11-1.310.6070.024-0.138
12-0.4870.1770.289-0.154
13-0.1070.274-0.231-0.007
Standard thresholds
P-value Threshold
0.001 5.01131
0.0005 6.01216
0.0001 7.52751