Motif | NOTO.H12CORE.0.SM.B |
Gene (human) | NOTO (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Noto |
Gene synonyms (mouse) | Not |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | NOTO.H12CORE.0.SM.B |
Gene (human) | NOTO (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Noto |
Gene synonyms (mouse) | Not |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 13 |
Consensus | nvbYMATTAvbnn |
GC content | 40.24% |
Information content (bits; total / per base) | 9.813 / 0.755 |
Data sources | HT-SELEX + Methyl-HT-SELEX |
Aligned words | 9834 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 3 experiments | median | 0.95 | 0.918 | 0.914 | 0.873 | 0.865 | 0.823 |
best | 0.955 | 0.931 | 0.93 | 0.892 | 0.895 | 0.854 | |
Methyl HT-SELEX, 1 experiments | median | 0.941 | 0.906 | 0.914 | 0.873 | 0.865 | 0.823 |
best | 0.941 | 0.906 | 0.914 | 0.873 | 0.865 | 0.823 | |
Non-Methyl HT-SELEX, 2 experiments | median | 0.953 | 0.925 | 0.903 | 0.872 | 0.812 | 0.795 |
best | 0.955 | 0.931 | 0.93 | 0.892 | 0.895 | 0.854 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | NK-related {3.1.2} (TFClass) |
TF subfamily | NOTO {3.1.2.20} (TFClass) |
TFClass ID | TFClass: 3.1.2.20.1 |
HGNC | HGNC:31839 |
MGI | MGI:3053002 |
EntrezGene (human) | GeneID:344022 (SSTAR profile) |
EntrezGene (mouse) | GeneID:384452 (SSTAR profile) |
UniProt ID (human) | NOTO_HUMAN |
UniProt ID (mouse) | NOTO_MOUSE |
UniProt AC (human) | A8MTQ0 (TFClass) |
UniProt AC (mouse) | Q5TIS6 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 2 |
Methyl-HT-SELEX | 1 |
PCM | NOTO.H12CORE.0.SM.B.pcm |
PWM | NOTO.H12CORE.0.SM.B.pwm |
PFM | NOTO.H12CORE.0.SM.B.pfm |
Alignment | NOTO.H12CORE.0.SM.B.words.tsv |
Threshold to P-value map | NOTO.H12CORE.0.SM.B.thr |
Motif in other formats | |
JASPAR format | NOTO.H12CORE.0.SM.B_jaspar_format.txt |
MEME format | NOTO.H12CORE.0.SM.B_meme_format.meme |
Transfac format | NOTO.H12CORE.0.SM.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 2871.75 | 2685.75 | 2280.75 | 1995.75 |
02 | 1868.75 | 3969.75 | 2339.75 | 1655.75 |
03 | 1039.0 | 5719.0 | 1374.0 | 1702.0 |
04 | 1169.0 | 2117.0 | 528.0 | 6020.0 |
05 | 4133.0 | 5357.0 | 0.0 | 344.0 |
06 | 9583.0 | 0.0 | 251.0 | 0.0 |
07 | 0.0 | 5.0 | 0.0 | 9829.0 |
08 | 1.0 | 206.0 | 34.0 | 9593.0 |
09 | 9533.0 | 22.0 | 105.0 | 174.0 |
10 | 3402.0 | 1984.0 | 4030.0 | 418.0 |
11 | 662.0 | 4511.0 | 2519.0 | 2142.0 |
12 | 1509.25 | 2934.25 | 3283.25 | 2107.25 |
13 | 2208.0 | 3234.0 | 1951.0 | 2441.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.292 | 0.273 | 0.232 | 0.203 |
02 | 0.19 | 0.404 | 0.238 | 0.168 |
03 | 0.106 | 0.582 | 0.14 | 0.173 |
04 | 0.119 | 0.215 | 0.054 | 0.612 |
05 | 0.42 | 0.545 | 0.0 | 0.035 |
06 | 0.974 | 0.0 | 0.026 | 0.0 |
07 | 0.0 | 0.001 | 0.0 | 0.999 |
08 | 0.0 | 0.021 | 0.003 | 0.975 |
09 | 0.969 | 0.002 | 0.011 | 0.018 |
10 | 0.346 | 0.202 | 0.41 | 0.043 |
11 | 0.067 | 0.459 | 0.256 | 0.218 |
12 | 0.153 | 0.298 | 0.334 | 0.214 |
13 | 0.225 | 0.329 | 0.198 | 0.248 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.155 | 0.088 | -0.075 | -0.208 |
02 | -0.274 | 0.479 | -0.049 | -0.395 |
03 | -0.86 | 0.844 | -0.581 | -0.367 |
04 | -0.742 | -0.149 | -1.535 | 0.895 |
05 | 0.519 | 0.778 | -6.976 | -1.961 |
06 | 1.36 | -6.976 | -2.274 | -6.976 |
07 | -6.976 | -5.821 | -6.976 | 1.385 |
08 | -6.615 | -2.469 | -4.216 | 1.361 |
09 | 1.355 | -4.618 | -3.133 | -2.636 |
10 | 0.325 | -0.214 | 0.494 | -1.767 |
11 | -1.31 | 0.607 | 0.024 | -0.138 |
12 | -0.487 | 0.177 | 0.289 | -0.154 |
13 | -0.107 | 0.274 | -0.231 | -0.007 |
P-value | Threshold |
---|---|
0.001 | 5.01131 |
0.0005 | 6.01216 |
0.0001 | 7.52751 |