MotifNKX61.H12CORE.1.P.B
Gene (human)NKX6-1
(GeneCards)
Gene synonyms (human)NKX6A
Gene (mouse)Nkx6-1
Gene synonyms (mouse)Nkx6.1, Nkx6a
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
B
Motif length8
ConsensushTAATGRb
GC content30.23%
Information content (bits; total / per base)9.229 / 1.154
Data sourcesChIP-Seq
Aligned words997

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 3 (19) 0.755 0.813 0.585 0.687 0.685 0.789 1.694 2.223 62.854 123.721

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 6 experiments median 0.861 0.815 0.775 0.739 0.667 0.66
best 0.983 0.974 0.96 0.944 0.931 0.906
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyNK-related {3.1.2} (TFClass)
TF subfamilyNK6 {3.1.2.19} (TFClass)
TFClass IDTFClass: 3.1.2.19.1
HGNCHGNC:7839
MGIMGI:1206039
EntrezGene (human)GeneID:4825
(SSTAR profile)
EntrezGene (mouse)GeneID:18096
(SSTAR profile)
UniProt ID (human)NKX61_HUMAN
UniProt ID (mouse)NKX61_MOUSE
UniProt AC (human)P78426
(TFClass)
UniProt AC (mouse)Q99MA9
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 3 mouse
HT-SELEX 6
Methyl-HT-SELEX 0
PCM
ACGT
01131.0224.068.0574.0
0280.017.011.0889.0
03843.015.0126.013.0
04989.01.03.04.0
054.03.03.0987.0
061.09.0899.088.0
07623.016.0298.060.0
08124.0300.0418.0155.0
PFM
ACGT
010.1310.2250.0680.576
020.080.0170.0110.892
030.8460.0150.1260.013
040.9920.0010.0030.004
050.0040.0030.0030.99
060.0010.0090.9020.088
070.6250.0160.2990.06
080.1240.3010.4190.155
PWM
ACGT
01-0.637-0.106-1.2810.83
02-1.122-2.595-2.9821.267
031.214-2.708-0.675-2.836
041.373-4.522-3.972-3.78
05-3.78-3.972-3.9721.371
06-4.522-3.1531.278-1.029
070.912-2.650.178-1.403
08-0.6910.1840.514-0.471
Standard thresholds
P-value Threshold
0.001 4.98607
0.0005 5.930035
0.0001 7.533245