Motif | NKX22.H12CORE.0.P.B |
Gene (human) | NKX2-2 (GeneCards) |
Gene synonyms (human) | NKX2.2, NKX2B |
Gene (mouse) | Nkx2-2 |
Gene synonyms (mouse) | Nkx-2.2, Nkx2b |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | NKX22.H12CORE.0.P.B |
Gene (human) | NKX2-2 (GeneCards) |
Gene synonyms (human) | NKX2.2, NKX2B |
Gene (mouse) | Nkx2-2 |
Gene synonyms (mouse) | Nkx-2.2, Nkx2b |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 10 |
Consensus | nYbRAGWGbn |
GC content | 51.9% |
Information content (bits; total / per base) | 7.067 / 0.707 |
Data sources | ChIP-Seq |
Aligned words | 999 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Mouse | 5 (35) | 0.755 | 0.835 | 0.582 | 0.69 | 0.648 | 0.71 | 1.485 | 1.758 | 69.721 | 155.444 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | NK-related {3.1.2} (TFClass) |
TF subfamily | NK2.2 {3.1.2.15} (TFClass) |
TFClass ID | TFClass: 3.1.2.15.1 |
HGNC | HGNC:7835 |
MGI | MGI:97347 |
EntrezGene (human) | GeneID:4821 (SSTAR profile) |
EntrezGene (mouse) | GeneID:18088 (SSTAR profile) |
UniProt ID (human) | NKX22_HUMAN |
UniProt ID (mouse) | NKX22_MOUSE |
UniProt AC (human) | O95096 (TFClass) |
UniProt AC (mouse) | P42586 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 5 mouse |
HT-SELEX | 0 |
Methyl-HT-SELEX | 0 |
PCM | NKX22.H12CORE.0.P.B.pcm |
PWM | NKX22.H12CORE.0.P.B.pwm |
PFM | NKX22.H12CORE.0.P.B.pfm |
Alignment | NKX22.H12CORE.0.P.B.words.tsv |
Threshold to P-value map | NKX22.H12CORE.0.P.B.thr |
Motif in other formats | |
JASPAR format | NKX22.H12CORE.0.P.B_jaspar_format.txt |
MEME format | NKX22.H12CORE.0.P.B_meme_format.meme |
Transfac format | NKX22.H12CORE.0.P.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 139.0 | 335.0 | 256.0 | 269.0 |
02 | 100.0 | 206.0 | 80.0 | 613.0 |
03 | 132.0 | 211.0 | 253.0 | 403.0 |
04 | 385.0 | 97.0 | 509.0 | 8.0 |
05 | 963.0 | 1.0 | 6.0 | 29.0 |
06 | 15.0 | 20.0 | 934.0 | 30.0 |
07 | 317.0 | 8.0 | 92.0 | 582.0 |
08 | 64.0 | 12.0 | 913.0 | 10.0 |
09 | 29.0 | 390.0 | 383.0 | 197.0 |
10 | 169.0 | 295.0 | 184.0 | 351.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.139 | 0.335 | 0.256 | 0.269 |
02 | 0.1 | 0.206 | 0.08 | 0.614 |
03 | 0.132 | 0.211 | 0.253 | 0.403 |
04 | 0.385 | 0.097 | 0.51 | 0.008 |
05 | 0.964 | 0.001 | 0.006 | 0.029 |
06 | 0.015 | 0.02 | 0.935 | 0.03 |
07 | 0.317 | 0.008 | 0.092 | 0.583 |
08 | 0.064 | 0.012 | 0.914 | 0.01 |
09 | 0.029 | 0.39 | 0.383 | 0.197 |
10 | 0.169 | 0.295 | 0.184 | 0.351 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.581 | 0.292 | 0.025 | 0.074 |
02 | -0.905 | -0.191 | -1.124 | 0.894 |
03 | -0.632 | -0.167 | 0.013 | 0.476 |
04 | 0.43 | -0.935 | 0.708 | -3.252 |
05 | 1.344 | -4.524 | -3.483 | -2.102 |
06 | -2.71 | -2.449 | 1.314 | -2.07 |
07 | 0.237 | -3.252 | -0.987 | 0.842 |
08 | -1.342 | -2.908 | 1.291 | -3.065 |
09 | -2.102 | 0.443 | 0.425 | -0.235 |
10 | -0.387 | 0.165 | -0.303 | 0.338 |
P-value | Threshold |
---|---|
0.001 | 5.295255 |
0.0005 | 5.89934 |
0.0001 | 6.841635 |