MotifNGN1.H12INVITRO.0.SM.B
Gene (human)NEUROG1
(GeneCards)
Gene synonyms (human)BHLHA6, NEUROD3, NGN, NGN1
Gene (mouse)Neurog1
Gene synonyms (mouse)Ath4c, Neurod3, Ngn, Ngn1
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length14
ConsensusndYRACATATGYYn
GC content42.41%
Information content (bits; total / per base)16.065 / 1.148
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9939

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.997 0.995 0.92 0.92 0.753 0.777
best 1.0 0.999 0.994 0.994 0.821 0.849
Methyl HT-SELEX, 2 experiments median 0.998 0.997 0.919 0.924 0.757 0.785
best 1.0 0.999 0.994 0.994 0.821 0.849
Non-Methyl HT-SELEX, 2 experiments median 0.996 0.994 0.92 0.92 0.753 0.777
best 0.997 0.995 0.935 0.934 0.764 0.789
TF superclassBasic domains {1} (TFClass)
TF classBasic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF familyTal-related {1.2.3} (TFClass)
TF subfamilyNeurogenin-ATO {1.2.3.4} (TFClass)
TFClass IDTFClass: 1.2.3.4.5
HGNCHGNC:7764
MGIMGI:107754
EntrezGene (human)GeneID:4762
(SSTAR profile)
EntrezGene (mouse)GeneID:18014
(SSTAR profile)
UniProt ID (human)NGN1_HUMAN
UniProt ID (mouse)NGN1_MOUSE
UniProt AC (human)Q92886
(TFClass)
UniProt AC (mouse)P70660
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 2
Methyl-HT-SELEX 2
PCM
ACGT
012379.02876.02666.02018.0
022552.75825.755495.751064.75
03141.03969.0683.05146.0
043393.0103.06392.051.0
057968.0980.0944.047.0
068.09898.033.00.0
079909.04.023.03.0
082.06.015.09916.0
099918.04.09.08.0
108.013.010.09908.0
1114.017.09899.09.0
1235.02399.02161.05344.0
13219.53744.5397.55577.5
142830.752547.752896.751663.75
PFM
ACGT
010.2390.2890.2680.203
020.2570.0830.5530.107
030.0140.3990.0690.518
040.3410.010.6430.005
050.8020.0990.0950.005
060.0010.9960.0030.0
070.9970.00.0020.0
080.00.0010.0020.998
090.9980.00.0010.001
100.0010.0010.0010.997
110.0010.0020.9960.001
120.0040.2410.2170.538
130.0220.3770.040.561
140.2850.2560.2910.167
PWM
ACGT
01-0.0430.1460.07-0.208
020.027-1.10.793-0.846
03-2.8540.468-1.2890.728
040.311-3.1620.944-3.843
051.165-0.929-0.966-3.921
06-5.4871.381-4.255-6.985
071.383-5.978-4.588-6.151
08-6.36-5.702-4.9681.383
091.383-5.978-5.394-5.487
10-5.487-5.091-5.3091.382
11-5.028-4.8591.382-5.394
12-4.2-0.035-0.1390.765
13-2.4170.41-1.8280.808
140.130.0250.153-0.401
Standard thresholds
P-value Threshold
0.001 -0.02429
0.0005 1.81701
0.0001 5.20176