NFYC.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	NFYC.H12INVITRO.0.P.D
Gene (human)	NFYC (GeneCards)
Gene synonyms (human)
Gene (mouse)	Nfyc
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	15
Consensus	nbbRRCCAATSRRMR
GC content	47.33%
Information content (bits; total / per base)	13.81 / 0.921
Data sources	ChIP-Seq
Aligned words	998

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (14)	0.747	0.977	0.7	0.939	0.7	0.969	3.07	5.037	49.453	331.328
Mouse	1 (7)	0.975	0.981	0.933	0.952	0.977	0.98	5.568	5.751	265.553	274.237

TF superclass	Other all-alpha-helical DNA-binding domains {4} (TFClass)
TF class	Heteromeric CCAAT-binding factors {4.2} (TFClass)
TF family	Heteromeric CCAAT-binding {4.2.1} (TFClass)
TF subfamily	{4.2.1.0} (TFClass)
TFClass ID	TFClass: 4.2.1.0.3
HGNC	HGNC:7806
MGI	MGI:107901
EntrezGene (human)	GeneID:4802 (SSTAR profile)
EntrezGene (mouse)	GeneID:18046 (SSTAR profile)
UniProt ID (human)	NFYC_HUMAN
UniProt ID (mouse)	NFYC_MOUSE
UniProt AC (human)	Q13952 (TFClass)
UniProt AC (mouse)	P70353 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 1 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	NFYC.H12INVITRO.0.P.D.pcm
PWM	NFYC.H12INVITRO.0.P.D.pwm
PFM	NFYC.H12INVITRO.0.P.D.pfm
Alignment	NFYC.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	NFYC.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	NFYC.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	NFYC.H12INVITRO.0.P.D_meme_format.meme
Transfac format	NFYC.H12INVITRO.0.P.D_transfac_format.txt
Homer format	NFYC.H12INVITRO.0.P.D_homer_format_0.001.txt NFYC.H12INVITRO.0.P.D_homer_format_0.0005.txt NFYC.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	368.0	194.0	236.0	200.0
02	125.0	335.0	187.0	351.0
03	83.0	402.0	140.0	373.0
04	572.0	84.0	289.0	53.0
05	336.0	32.0	526.0	104.0
06	0.0	989.0	1.0	8.0
07	2.0	991.0	3.0	2.0
08	988.0	0.0	0.0	10.0
09	984.0	1.0	10.0	3.0
10	0.0	6.0	0.0	992.0
11	116.0	614.0	235.0	33.0
12	708.0	40.0	245.0	5.0
13	181.0	154.0	604.0	59.0
14	596.0	191.0	133.0	78.0
15	452.0	32.0	412.0	102.0

PFM

	A	C	G	T
01	0.369	0.194	0.236	0.2
02	0.125	0.336	0.187	0.352
03	0.083	0.403	0.14	0.374
04	0.573	0.084	0.29	0.053
05	0.337	0.032	0.527	0.104
06	0.0	0.991	0.001	0.008
07	0.002	0.993	0.003	0.002
08	0.99	0.0	0.0	0.01
09	0.986	0.001	0.01	0.003
10	0.0	0.006	0.0	0.994
11	0.116	0.615	0.235	0.033
12	0.709	0.04	0.245	0.005
13	0.181	0.154	0.605	0.059
14	0.597	0.191	0.133	0.078
15	0.453	0.032	0.413	0.102

PWM

	A	C	G	T
01	0.386	-0.25	-0.055	-0.219
02	-0.684	0.293	-0.286	0.339
03	-1.087	0.474	-0.572	0.4
04	0.826	-1.075	0.146	-1.524
05	0.296	-2.008	0.742	-0.865
06	-4.98	1.372	-4.523	-3.252
07	-4.211	1.374	-3.973	-4.211
08	1.371	-4.98	-4.98	-3.065
09	1.367	-4.523	-3.065	-3.973
10	-4.98	-3.482	-4.98	1.375
11	-0.758	0.896	-0.059	-1.979
12	1.039	-1.795	-0.018	-3.62
13	-0.318	-0.478	0.88	-1.42
14	0.867	-0.265	-0.623	-1.148
15	0.591	-2.008	0.499	-0.885

Standard thresholds

P-value	Threshold
0.001	3.03301
0.0005	4.29366
0.0001	6.99901