NFYB.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	NFYB.H12RSNP.0.P.D
Gene (human)	NFYB (GeneCards)
Gene synonyms (human)	HAP3
Gene (mouse)	Nfyb
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	14
Consensus	bbRRCCAATSRvvd
GC content	47.72%
Information content (bits; total / per base)	13.586 / 0.97
Data sources	ChIP-Seq
Aligned words	1001

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (12)	0.939	0.981	0.885	0.945	0.929	0.976	4.668	5.061	220.925	278.398
Mouse	1 (7)	0.974	0.982	0.933	0.942	0.973	0.982	5.292	5.469	240.081	258.553

TF superclass	Other all-alpha-helical DNA-binding domains {4} (TFClass)
TF class	Heteromeric CCAAT-binding factors {4.2} (TFClass)
TF family	Heteromeric CCAAT-binding {4.2.1} (TFClass)
TF subfamily	{4.2.1.0} (TFClass)
TFClass ID	TFClass: 4.2.1.0.2
HGNC	HGNC:7805
MGI	MGI:97317
EntrezGene (human)	GeneID:4801 (SSTAR profile)
EntrezGene (mouse)	GeneID:18045 (SSTAR profile)
UniProt ID (human)	NFYB_HUMAN
UniProt ID (mouse)	NFYB_MOUSE
UniProt AC (human)	P25208 (TFClass)
UniProt AC (mouse)	P63139 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 1 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	NFYB.H12RSNP.0.P.D.pcm
PWM	NFYB.H12RSNP.0.P.D.pwm
PFM	NFYB.H12RSNP.0.P.D.pfm
Alignment	NFYB.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	NFYB.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	NFYB.H12RSNP.0.P.D_jaspar_format.txt
MEME format	NFYB.H12RSNP.0.P.D_meme_format.meme
Transfac format	NFYB.H12RSNP.0.P.D_transfac_format.txt
Homer format	NFYB.H12RSNP.0.P.D_homer_format_0.001.txt NFYB.H12RSNP.0.P.D_homer_format_0.0005.txt NFYB.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	141.0	310.0	181.0	369.0
02	87.0	376.0	161.0	377.0
03	563.0	66.0	352.0	20.0
04	355.0	24.0	522.0	100.0
05	1.0	995.0	2.0	3.0
06	1.0	994.0	2.0	4.0
07	992.0	0.0	0.0	9.0
08	984.0	8.0	6.0	3.0
09	1.0	5.0	0.0	995.0
10	139.0	579.0	241.0	42.0
11	685.0	29.0	278.0	9.0
12	189.0	181.0	563.0	68.0
13	571.0	227.0	129.0	74.0
14	418.0	33.0	424.0	126.0

PFM

	A	C	G	T
01	0.141	0.31	0.181	0.369
02	0.087	0.376	0.161	0.377
03	0.562	0.066	0.352	0.02
04	0.355	0.024	0.521	0.1
05	0.001	0.994	0.002	0.003
06	0.001	0.993	0.002	0.004
07	0.991	0.0	0.0	0.009
08	0.983	0.008	0.006	0.003
09	0.001	0.005	0.0	0.994
10	0.139	0.578	0.241	0.042
11	0.684	0.029	0.278	0.009
12	0.189	0.181	0.562	0.068
13	0.57	0.227	0.129	0.074
14	0.418	0.033	0.424	0.126

PWM

	A	C	G	T
01	-0.568	0.213	-0.321	0.386
02	-1.044	0.405	-0.437	0.407
03	0.807	-1.314	0.339	-2.451
04	0.348	-2.282	0.732	-0.907
05	-4.526	1.375	-4.214	-3.976
06	-4.526	1.374	-4.214	-3.784
07	1.372	-4.983	-4.983	-3.157
08	1.364	-3.254	-3.485	-3.976
09	-4.526	-3.623	-4.983	1.375
10	-0.583	0.835	-0.037	-1.751
11	1.003	-2.104	0.104	-3.157
12	-0.278	-0.321	0.807	-1.285
13	0.821	-0.097	-0.656	-1.202
14	0.51	-1.982	0.524	-0.679

Standard thresholds

P-value	Threshold
0.001	3.10971
0.0005	4.33776
0.0001	7.04696