NFYA.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	NFYA.H12INVITRO.0.P.D
Gene (human)	NFYA (GeneCards)
Gene synonyms (human)
Gene (mouse)	Nfya
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	15
Consensus	nbbRdCCAATSRvMR
GC content	46.31%
Information content (bits; total / per base)	13.017 / 0.868
Data sources	ChIP-Seq
Aligned words	996

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (13)	0.96	0.978	0.913	0.947	0.952	0.972	4.844	5.098	216.31	249.658
Mouse	4 (23)	0.842	0.959	0.787	0.91	0.82	0.961	4.02	5.187	130.387	206.796

TF superclass	Other all-alpha-helical DNA-binding domains {4} (TFClass)
TF class	Heteromeric CCAAT-binding factors {4.2} (TFClass)
TF family	Heteromeric CCAAT-binding {4.2.1} (TFClass)
TF subfamily	{4.2.1.0} (TFClass)
TFClass ID	TFClass: 4.2.1.0.1
HGNC	HGNC:7804
MGI	MGI:97316
EntrezGene (human)	GeneID:4800 (SSTAR profile)
EntrezGene (mouse)	GeneID:18044 (SSTAR profile)
UniProt ID (human)	NFYA_HUMAN
UniProt ID (mouse)	NFYA_MOUSE
UniProt AC (human)	P23511 (TFClass)
UniProt AC (mouse)	P23708 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 4 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	NFYA.H12INVITRO.0.P.D.pcm
PWM	NFYA.H12INVITRO.0.P.D.pwm
PFM	NFYA.H12INVITRO.0.P.D.pfm
Alignment	NFYA.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	NFYA.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	NFYA.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	NFYA.H12INVITRO.0.P.D_meme_format.meme
Transfac format	NFYA.H12INVITRO.0.P.D_transfac_format.txt
Homer format	NFYA.H12INVITRO.0.P.D_homer_format_0.001.txt NFYA.H12INVITRO.0.P.D_homer_format_0.0005.txt NFYA.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	333.0	186.0	240.0	237.0
02	150.0	316.0	173.0	357.0
03	108.0	359.0	163.0	366.0
04	519.0	96.0	334.0	47.0
05	353.0	41.0	481.0	121.0
06	3.0	979.0	2.0	12.0
07	8.0	981.0	2.0	5.0
08	984.0	1.0	1.0	10.0
09	976.0	6.0	10.0	4.0
10	2.0	9.0	0.0	985.0
11	155.0	546.0	253.0	42.0
12	657.0	43.0	288.0	8.0
13	256.0	173.0	509.0	58.0
14	621.0	178.0	128.0	69.0
15	478.0	33.0	387.0	98.0

PFM

	A	C	G	T
01	0.334	0.187	0.241	0.238
02	0.151	0.317	0.174	0.358
03	0.108	0.36	0.164	0.367
04	0.521	0.096	0.335	0.047
05	0.354	0.041	0.483	0.121
06	0.003	0.983	0.002	0.012
07	0.008	0.985	0.002	0.005
08	0.988	0.001	0.001	0.01
09	0.98	0.006	0.01	0.004
10	0.002	0.009	0.0	0.989
11	0.156	0.548	0.254	0.042
12	0.66	0.043	0.289	0.008
13	0.257	0.174	0.511	0.058
14	0.623	0.179	0.129	0.069
15	0.48	0.033	0.389	0.098

PWM

	A	C	G	T
01	0.289	-0.289	-0.037	-0.049
02	-0.502	0.237	-0.361	0.358
03	-0.826	0.364	-0.42	0.383
04	0.731	-0.942	0.292	-1.638
05	0.347	-1.77	0.655	-0.714
06	-3.971	1.364	-4.209	-2.905
07	-3.25	1.366	-4.209	-3.618
08	1.369	-4.522	-4.522	-3.063
09	1.361	-3.48	-3.063	-3.779
10	-4.209	-3.152	-4.979	1.37
11	-0.47	0.781	0.016	-1.746
12	0.966	-1.724	0.145	-3.25
13	0.028	-0.361	0.711	-1.435
14	0.91	-0.333	-0.659	-1.266
15	0.649	-1.977	0.439	-0.922

Standard thresholds

P-value	Threshold
0.001	3.50826
0.0005	4.66306
0.0001	7.18046