MotifNFYA.H12CORE.0.P.B
Gene (human)NFYA
(GeneCards)
Gene synonyms (human)
Gene (mouse)Nfya
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length15
ConsensusnbbRdCCAATSRvMR
GC content46.31%
Information content (bits; total / per base)13.017 / 0.868
Data sourcesChIP-Seq
Aligned words996

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (13) 0.96 0.978 0.913 0.947 0.952 0.972 4.844 5.098 216.31 249.658
Mouse 4 (23) 0.842 0.959 0.787 0.91 0.82 0.961 4.02 5.187 130.387 206.796
TF superclassOther all-alpha-helical DNA-binding domains {4} (TFClass)
TF classHeteromeric CCAAT-binding factors {4.2} (TFClass)
TF familyHeteromeric CCAAT-binding {4.2.1} (TFClass)
TF subfamily {4.2.1.0} (TFClass)
TFClass IDTFClass: 4.2.1.0.1
HGNCHGNC:7804
MGIMGI:97316
EntrezGene (human)GeneID:4800
(SSTAR profile)
EntrezGene (mouse)GeneID:18044
(SSTAR profile)
UniProt ID (human)NFYA_HUMAN
UniProt ID (mouse)NFYA_MOUSE
UniProt AC (human)P23511
(TFClass)
UniProt AC (mouse)P23708
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 4 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01333.0186.0240.0237.0
02150.0316.0173.0357.0
03108.0359.0163.0366.0
04519.096.0334.047.0
05353.041.0481.0121.0
063.0979.02.012.0
078.0981.02.05.0
08984.01.01.010.0
09976.06.010.04.0
102.09.00.0985.0
11155.0546.0253.042.0
12657.043.0288.08.0
13256.0173.0509.058.0
14621.0178.0128.069.0
15478.033.0387.098.0
PFM
ACGT
010.3340.1870.2410.238
020.1510.3170.1740.358
030.1080.360.1640.367
040.5210.0960.3350.047
050.3540.0410.4830.121
060.0030.9830.0020.012
070.0080.9850.0020.005
080.9880.0010.0010.01
090.980.0060.010.004
100.0020.0090.00.989
110.1560.5480.2540.042
120.660.0430.2890.008
130.2570.1740.5110.058
140.6230.1790.1290.069
150.480.0330.3890.098
PWM
ACGT
010.289-0.289-0.037-0.049
02-0.5020.237-0.3610.358
03-0.8260.364-0.420.383
040.731-0.9420.292-1.638
050.347-1.770.655-0.714
06-3.9711.364-4.209-2.905
07-3.251.366-4.209-3.618
081.369-4.522-4.522-3.063
091.361-3.48-3.063-3.779
10-4.209-3.152-4.9791.37
11-0.470.7810.016-1.746
120.966-1.7240.145-3.25
130.028-0.3610.711-1.435
140.91-0.333-0.659-1.266
150.649-1.9770.439-0.922
Standard thresholds
P-value Threshold
0.001 3.50826
0.0005 4.66306
0.0001 7.18046