MotifNFIX.H12INVIVO.1.S.D
Gene (human)NFIX
(GeneCards)
Gene synonyms (human)
Gene (mouse)Nfix
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
D
Motif length8
ConsensusdYGCCAAn
GC content54.98%
Information content (bits; total / per base)10.744 / 1.343
Data sourcesHT-SELEX
Aligned words7712

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 6 experiments median 0.986 0.978 0.981 0.969 0.965 0.949
best 0.992 0.988 0.99 0.984 0.985 0.976
Methyl HT-SELEX, 1 experiments median 0.986 0.977 0.981 0.969 0.968 0.952
best 0.986 0.977 0.981 0.969 0.968 0.952
Non-Methyl HT-SELEX, 5 experiments median 0.986 0.978 0.981 0.969 0.962 0.947
best 0.992 0.988 0.99 0.984 0.985 0.976

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.865 0.436 0.848 0.537
batch 2 0.686 0.401 0.724 0.506
TF superclassbeta-Hairpin exposed by an alpha/beta-scaffold {7} (TFClass)
TF classSMAD/NF-1 DNA-binding domain factors {7.1} (TFClass)
TF familyNF-1 {7.1.2} (TFClass)
TF subfamily {7.1.2.0} (TFClass)
TFClass IDTFClass: 7.1.2.0.4
HGNCHGNC:7788
MGIMGI:97311
EntrezGene (human)GeneID:4784
(SSTAR profile)
EntrezGene (mouse)GeneID:18032
(SSTAR profile)
UniProt ID (human)NFIX_HUMAN
UniProt ID (mouse)NFIX_MOUSE
UniProt AC (human)Q14938
(TFClass)
UniProt AC (mouse)P70257
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 5
Methyl-HT-SELEX 1
PCM
ACGT
011547.51464.53172.51527.5
021044.251095.2583.255489.25
030.00.07712.00.0
040.07712.00.00.0
050.07712.00.00.0
067712.00.00.00.0
077489.00.0223.00.0
081795.02223.02522.01172.0
PFM
ACGT
010.2010.190.4110.198
020.1350.1420.0110.712
030.00.01.00.0
040.01.00.00.0
050.01.00.00.0
061.00.00.00.0
070.9710.00.0290.0
080.2330.2880.3270.152
PWM
ACGT
01-0.22-0.2750.498-0.233
02-0.612-0.565-3.1171.046
03-6.76-6.761.385-6.76
04-6.761.385-6.76-6.76
05-6.761.385-6.76-6.76
061.385-6.76-6.76-6.76
071.356-6.76-2.148-6.76
08-0.0710.1420.268-0.497
Standard thresholds
P-value Threshold
0.001 3.80171
0.0005 6.207055
0.0001 7.90584