MotifNFIL3.H12INVIVO.1.S.B
Gene (human)NFIL3
(GeneCards)
Gene synonyms (human)E4BP4, IL3BP1
Gene (mouse)Nfil3
Gene synonyms (mouse)E4bp4
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
B
Motif length18
ConsensusddRTTACGTAAYnnnnnn
GC content43.31%
Information content (bits; total / per base)15.229 / 0.846
Data sourcesHT-SELEX
Aligned words9646

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (14) 0.912 0.942 0.881 0.911 0.933 0.958 4.114 4.334 491.496 534.745
Mouse 1 (4) 0.842 0.879 0.81 0.856 0.848 0.889 3.476 3.791 318.101 381.824

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 2 experiments median 0.905 0.906 0.82 0.832 0.727 0.75
best 0.998 0.997 0.998 0.996 0.888 0.905
TF superclassBasic domains {1} (TFClass)
TF classBasic leucine zipper factors (bZIP) {1.1} (TFClass)
TF familyC/EBP-related {1.1.8} (TFClass)
TF subfamilyPAR {1.1.8.2} (TFClass)
TFClass IDTFClass: 1.1.8.2.3
HGNCHGNC:7787
MGIMGI:109495
EntrezGene (human)GeneID:4783
(SSTAR profile)
EntrezGene (mouse)GeneID:18030
(SSTAR profile)
UniProt ID (human)NFIL3_HUMAN
UniProt ID (mouse)NFIL3_MOUSE
UniProt AC (human)Q16649
(TFClass)
UniProt AC (mouse)O08750
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 1 mouse
HT-SELEX 2
Methyl-HT-SELEX 0
PCM
ACGT
011892.51751.54063.51938.5
021567.751373.754469.752234.75
034217.0743.04627.059.0
045.02.01.09638.0
050.00.01570.08076.0
069288.00.0358.00.0
070.08640.00.01006.0
08755.00.08891.00.0
090.0221.00.09425.0
108544.01101.01.00.0
119645.01.00.00.0
1235.02805.01657.05149.0
133048.02950.01907.01741.0
142683.02064.02989.01910.0
151748.02950.02718.02230.0
161724.03346.02507.02069.0
171720.753424.752499.752000.75
181957.03178.02390.02121.0
PFM
ACGT
010.1960.1820.4210.201
020.1630.1420.4630.232
030.4370.0770.480.006
040.0010.00.00.999
050.00.00.1630.837
060.9630.00.0370.0
070.00.8960.00.104
080.0780.00.9220.0
090.00.0230.00.977
100.8860.1140.00.0
111.00.00.00.0
120.0040.2910.1720.534
130.3160.3060.1980.18
140.2780.2140.310.198
150.1810.3060.2820.231
160.1790.3470.260.214
170.1780.3550.2590.207
180.2030.3290.2480.22
PWM
ACGT
01-0.242-0.3190.521-0.218
02-0.43-0.5620.617-0.076
030.558-1.1750.651-3.673
04-5.802-6.332-6.5971.385
05-6.959-6.959-0.4291.208
061.348-6.959-1.902-6.959
07-6.9591.275-6.959-0.873
08-1.159-6.9591.304-6.959
09-6.959-2.38-6.9591.362
101.264-0.783-6.597-6.959
111.385-6.597-6.959-6.959
12-4.170.151-0.3750.758
130.2340.201-0.234-0.325
140.107-0.1550.215-0.233
15-0.3210.2010.12-0.078
16-0.3350.3270.039-0.153
17-0.3370.350.036-0.187
18-0.2090.276-0.009-0.128
Standard thresholds
P-value Threshold
0.001 0.36246
0.0005 2.11601
0.0001 6.12906