| Motif | NFIL3.H12INVITRO.0.P.B |
| Gene (human) | NFIL3 (GeneCards) |
| Gene synonyms (human) | E4BP4, IL3BP1 |
| Gene (mouse) | Nfil3 |
| Gene synonyms (mouse) | E4bp4 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | B |
| Motif | NFIL3.H12INVITRO.0.P.B |
| Gene (human) | NFIL3 (GeneCards) |
| Gene synonyms (human) | E4BP4, IL3BP1 |
| Gene (mouse) | Nfil3 |
| Gene synonyms (mouse) | E4bp4 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | B |
| Motif length | 10 |
| Consensus | vTTATGYAAY |
| GC content | 29.57% |
| Information content (bits; total / per base) | 12.922 / 1.292 |
| Data sources | ChIP-Seq |
| Aligned words | 993 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 2 (14) | 0.958 | 0.975 | 0.913 | 0.933 | 0.956 | 0.976 | 4.586 | 4.908 | 534.724 | 601.0 |
| Mouse | 1 (4) | 0.912 | 0.943 | 0.871 | 0.913 | 0.895 | 0.93 | 4.07 | 4.417 | 345.722 | 421.959 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 2 experiments | median | 0.912 | 0.91 | 0.828 | 0.836 | 0.746 | 0.764 |
| best | 0.998 | 0.997 | 0.997 | 0.995 | 0.916 | 0.926 | |
| TF superclass | Basic domains {1} (TFClass) |
| TF class | Basic leucine zipper factors (bZIP) {1.1} (TFClass) |
| TF family | C/EBP-related {1.1.8} (TFClass) |
| TF subfamily | PAR {1.1.8.2} (TFClass) |
| TFClass ID | TFClass: 1.1.8.2.3 |
| HGNC | HGNC:7787 |
| MGI | MGI:109495 |
| EntrezGene (human) | GeneID:4783 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:18030 (SSTAR profile) |
| UniProt ID (human) | NFIL3_HUMAN |
| UniProt ID (mouse) | NFIL3_MOUSE |
| UniProt AC (human) | Q16649 (TFClass) |
| UniProt AC (mouse) | O08750 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 2 human, 1 mouse |
| HT-SELEX | 2 |
| Methyl-HT-SELEX | 0 |
| PCM | NFIL3.H12INVITRO.0.P.B.pcm |
| PWM | NFIL3.H12INVITRO.0.P.B.pwm |
| PFM | NFIL3.H12INVITRO.0.P.B.pfm |
| Alignment | NFIL3.H12INVITRO.0.P.B.words.tsv |
| Threshold to P-value map | NFIL3.H12INVITRO.0.P.B.thr |
| Motif in other formats | |
| JASPAR format | NFIL3.H12INVITRO.0.P.B_jaspar_format.txt |
| MEME format | NFIL3.H12INVITRO.0.P.B_meme_format.meme |
| Transfac format | NFIL3.H12INVITRO.0.P.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 358.0 | 139.0 | 459.0 | 37.0 |
| 02 | 0.0 | 1.0 | 5.0 | 987.0 |
| 03 | 1.0 | 1.0 | 203.0 | 788.0 |
| 04 | 903.0 | 5.0 | 72.0 | 13.0 |
| 05 | 24.0 | 89.0 | 36.0 | 844.0 |
| 06 | 41.0 | 6.0 | 943.0 | 3.0 |
| 07 | 12.0 | 332.0 | 2.0 | 647.0 |
| 08 | 919.0 | 72.0 | 0.0 | 2.0 |
| 09 | 990.0 | 1.0 | 1.0 | 1.0 |
| 10 | 11.0 | 424.0 | 145.0 | 413.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.361 | 0.14 | 0.462 | 0.037 |
| 02 | 0.0 | 0.001 | 0.005 | 0.994 |
| 03 | 0.001 | 0.001 | 0.204 | 0.794 |
| 04 | 0.909 | 0.005 | 0.073 | 0.013 |
| 05 | 0.024 | 0.09 | 0.036 | 0.85 |
| 06 | 0.041 | 0.006 | 0.95 | 0.003 |
| 07 | 0.012 | 0.334 | 0.002 | 0.652 |
| 08 | 0.925 | 0.073 | 0.0 | 0.002 |
| 09 | 0.997 | 0.001 | 0.001 | 0.001 |
| 10 | 0.011 | 0.427 | 0.146 | 0.416 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.364 | -0.575 | 0.611 | -1.865 |
| 02 | -4.976 | -4.519 | -3.616 | 1.375 |
| 03 | -4.519 | -4.519 | -0.2 | 1.15 |
| 04 | 1.286 | -3.616 | -1.221 | -2.832 |
| 05 | -2.274 | -1.014 | -1.891 | 1.219 |
| 06 | -1.767 | -3.477 | 1.33 | -3.968 |
| 07 | -2.902 | 0.289 | -4.206 | 0.954 |
| 08 | 1.304 | -1.221 | -4.976 | -4.206 |
| 09 | 1.378 | -4.519 | -4.519 | -4.519 |
| 10 | -2.978 | 0.532 | -0.533 | 0.506 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.52057 |
| 0.0005 | 4.75699 |
| 0.0001 | 7.2486 |