MotifNFIA.H12CORE.0.P.B
Gene (human)NFIA
(GeneCards)
Gene synonyms (human)KIAA1439
Gene (mouse)Nfia
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length8
ConsensusbYTGGCWv
GC content61.47%
Information content (bits; total / per base)9.554 / 1.194
Data sourcesChIP-Seq
Aligned words983

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 3 (21) 0.756 0.791 0.576 0.623 0.636 0.648 1.353 1.406 127.854 198.125
Mouse 6 (28) 0.779 0.888 0.662 0.81 0.647 0.773 1.475 1.919 46.997 85.721

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 2 experiments median 0.977 0.962 0.96 0.941 0.829 0.837
best 0.987 0.978 0.981 0.968 0.889 0.891

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 100.0 4.137 0.28 0.14
TF superclassbeta-Hairpin exposed by an alpha/beta-scaffold {7} (TFClass)
TF classSMAD/NF-1 DNA-binding domain factors {7.1} (TFClass)
TF familyNF-1 {7.1.2} (TFClass)
TF subfamily {7.1.2.0} (TFClass)
TFClass IDTFClass: 7.1.2.0.1
HGNCHGNC:7784
MGIMGI:108056
EntrezGene (human)GeneID:4774
(SSTAR profile)
EntrezGene (mouse)GeneID:18027
(SSTAR profile)
UniProt ID (human)NFIA_HUMAN
UniProt ID (mouse)NFIA_MOUSE
UniProt AC (human)Q12857
(TFClass)
UniProt AC (mouse)Q02780
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 3 human, 6 mouse
HT-SELEX 2
Methyl-HT-SELEX 0
PCM
ACGT
0173.0521.0170.0219.0
0237.0412.08.0526.0
031.02.02.0978.0
042.00.0977.04.0
055.04.0969.05.0
0624.0950.05.04.0
07605.049.028.0301.0
08179.0244.0493.067.0
PFM
ACGT
010.0740.530.1730.223
020.0380.4190.0080.535
030.0010.0020.0020.995
040.0020.00.9940.004
050.0050.0040.9860.005
060.0240.9660.0050.004
070.6150.050.0280.306
080.1820.2480.5020.068
PWM
ACGT
01-1.1980.748-0.365-0.114
02-1.8550.514-3.2370.757
03-4.51-4.197-4.1971.376
04-4.197-4.9671.375-3.767
05-3.606-3.7671.367-3.606
06-2.2641.347-3.606-3.767
070.897-1.585-2.1190.202
08-0.314-0.0070.693-1.281
Standard thresholds
P-value Threshold
0.001 5.006745
0.0005 6.147985
0.0001 7.58777