| Motif | NFAC4.H12CORE.0.P.C |
| Gene (human) | NFATC4 (GeneCards) |
| Gene synonyms (human) | NFAT3 |
| Gene (mouse) | Nfatc4 |
| Gene synonyms (mouse) | Nfat3 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | C |
| Motif | NFAC4.H12CORE.0.P.C |
| Gene (human) | NFATC4 (GeneCards) |
| Gene synonyms (human) | NFAT3 |
| Gene (mouse) | Nfatc4 |
| Gene synonyms (mouse) | Nfat3 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | C |
| Motif length | 10 |
| Consensus | dGGAAARhdW |
| GC content | 35.69% |
| Information content (bits; total / per base) | 11.136 / 1.114 |
| Data sources | ChIP-Seq |
| Aligned words | 19 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 1 (4) | 0.529 | 0.532 | 0.347 | 0.348 | 0.562 | 0.577 | 1.172 | 1.201 | 0.0 | 0 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 4 experiments | median | 0.945 | 0.901 | 0.936 | 0.892 | 0.884 | 0.849 |
| best | 0.973 | 0.949 | 0.966 | 0.941 | 0.952 | 0.924 | |
| Methyl HT-SELEX, 2 experiments | median | 0.945 | 0.901 | 0.936 | 0.892 | 0.884 | 0.849 |
| best | 0.963 | 0.929 | 0.957 | 0.924 | 0.932 | 0.899 | |
| Non-Methyl HT-SELEX, 2 experiments | median | 0.927 | 0.881 | 0.914 | 0.868 | 0.855 | 0.824 |
| best | 0.973 | 0.949 | 0.966 | 0.941 | 0.952 | 0.924 | |
| TF superclass | Immunoglobulin fold {6} (TFClass) |
| TF class | Rel homology region (RHR) factors {6.1} (TFClass) |
| TF family | NFAT-related {6.1.3} (TFClass) |
| TF subfamily | {6.1.3.0} (TFClass) |
| TFClass ID | TFClass: 6.1.3.0.4 |
| HGNC | HGNC:7778 |
| MGI | MGI:1920431 |
| EntrezGene (human) | GeneID:4776 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:73181 (SSTAR profile) |
| UniProt ID (human) | NFAC4_HUMAN |
| UniProt ID (mouse) | NFAC4_MOUSE |
| UniProt AC (human) | Q14934 (TFClass) |
| UniProt AC (mouse) | Q8K120 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 1 human, 0 mouse |
| HT-SELEX | 2 |
| Methyl-HT-SELEX | 2 |
| PCM | NFAC4.H12CORE.0.P.C.pcm |
| PWM | NFAC4.H12CORE.0.P.C.pwm |
| PFM | NFAC4.H12CORE.0.P.C.pfm |
| Alignment | NFAC4.H12CORE.0.P.C.words.tsv |
| Threshold to P-value map | NFAC4.H12CORE.0.P.C.thr |
| Motif in other formats | |
| JASPAR format | NFAC4.H12CORE.0.P.C_jaspar_format.txt |
| MEME format | NFAC4.H12CORE.0.P.C_meme_format.meme |
| Transfac format | NFAC4.H12CORE.0.P.C_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 7.893 | 2.723 | 3.933 | 4.483 |
| 02 | 0.0 | 0.0 | 18.04 | 0.99 |
| 03 | 0.0 | 0.0 | 19.03 | 0.0 |
| 04 | 19.03 | 0.0 | 0.0 | 0.0 |
| 05 | 19.03 | 0.0 | 0.0 | 0.0 |
| 06 | 19.03 | 0.0 | 0.0 | 0.0 |
| 07 | 11.99 | 2.97 | 3.08 | 0.99 |
| 08 | 3.96 | 4.95 | 2.09 | 8.03 |
| 09 | 3.08 | 2.97 | 4.07 | 8.91 |
| 10 | 5.94 | 0.0 | 4.07 | 9.02 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.415 | 0.143 | 0.207 | 0.236 |
| 02 | 0.0 | 0.0 | 0.948 | 0.052 |
| 03 | 0.0 | 0.0 | 1.0 | 0.0 |
| 04 | 1.0 | 0.0 | 0.0 | 0.0 |
| 05 | 1.0 | 0.0 | 0.0 | 0.0 |
| 06 | 1.0 | 0.0 | 0.0 | 0.0 |
| 07 | 0.63 | 0.156 | 0.162 | 0.052 |
| 08 | 0.208 | 0.26 | 0.11 | 0.422 |
| 09 | 0.162 | 0.156 | 0.214 | 0.468 |
| 10 | 0.312 | 0.0 | 0.214 | 0.474 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.451 | -0.463 | -0.163 | -0.051 |
| 02 | -2.009 | -2.009 | 1.229 | -1.158 |
| 03 | -2.009 | -2.009 | 1.28 | -2.009 |
| 04 | 1.28 | -2.009 | -2.009 | -2.009 |
| 05 | 1.28 | -2.009 | -2.009 | -2.009 |
| 06 | 1.28 | -2.009 | -2.009 | -2.009 |
| 07 | 0.84 | -0.394 | -0.364 | -1.158 |
| 08 | -0.157 | 0.034 | -0.665 | 0.467 |
| 09 | -0.364 | -0.394 | -0.134 | 0.563 |
| 10 | 0.195 | -2.009 | -0.134 | 0.574 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.89599 |
| 0.0005 | 5.700815 |
| 0.0001 | 7.234575 |