MotifNDF2.H12INVIVO.0.P.B
Gene (human)NEUROD2
(GeneCards)
Gene synonyms (human)BHLHA1, NDRF
Gene (mouse)Neurod2
Gene synonyms (mouse)Ndrf
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length11
ConsensusRRCAGMTGGbn
GC content58.72%
Information content (bits; total / per base)12.257 / 1.114
Data sourcesChIP-Seq
Aligned words1000

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 8 (46) 0.913 0.962 0.831 0.915 0.868 0.927 2.954 3.412 182.4 251.377

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 2 experiments median 0.646 0.604 0.588 0.568 0.555 0.546
best 0.652 0.609 0.59 0.57 0.556 0.547
TF superclassBasic domains {1} (TFClass)
TF classBasic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF familyTal-related {1.2.3} (TFClass)
TF subfamilyNeurogenin-ATO {1.2.3.4} (TFClass)
TFClass IDTFClass: 1.2.3.4.2
HGNCHGNC:7763
MGIMGI:107755
EntrezGene (human)GeneID:4761
(SSTAR profile)
EntrezGene (mouse)GeneID:18013
(SSTAR profile)
UniProt ID (human)NDF2_HUMAN
UniProt ID (mouse)NDF2_MOUSE
UniProt AC (human)Q15784
(TFClass)
UniProt AC (mouse)Q62414
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 8 mouse
HT-SELEX 2
Methyl-HT-SELEX 0
PCM
ACGT
01461.091.0394.054.0
02320.0184.0487.09.0
030.01000.00.00.0
04999.00.00.01.0
051.09.0946.044.0
06672.0288.032.08.0
0783.05.01.0911.0
080.00.0955.045.0
098.040.0900.052.0
10143.0434.0213.0210.0
11349.0184.0296.0171.0
PFM
ACGT
010.4610.0910.3940.054
020.320.1840.4870.009
030.01.00.00.0
040.9990.00.00.001
050.0010.0090.9460.044
060.6720.2880.0320.008
070.0830.0050.0010.911
080.00.00.9550.045
090.0080.040.90.052
100.1430.4340.2130.21
110.3490.1840.2960.171
PWM
ACGT
010.609-0.9990.452-1.508
020.245-0.3040.663-3.156
03-4.9821.381-4.982-4.982
041.38-4.982-4.982-4.525
05-4.525-3.1561.326-1.706
060.9840.141-2.01-3.253
07-1.089-3.622-4.5251.288
08-4.982-4.9821.335-1.684
09-3.253-1.7971.276-1.544
10-0.5530.549-0.159-0.173
110.332-0.3040.168-0.377
Standard thresholds
P-value Threshold
0.001 3.815285
0.0005 4.95839
0.0001 7.28196