| Motif | NDF2.H12INVITRO.0.P.B |
| Gene (human) | NEUROD2 (GeneCards) |
| Gene synonyms (human) | BHLHA1, NDRF |
| Gene (mouse) | Neurod2 |
| Gene synonyms (mouse) | Ndrf |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | B |
| Motif | NDF2.H12INVITRO.0.P.B |
| Gene (human) | NEUROD2 (GeneCards) |
| Gene synonyms (human) | BHLHA1, NDRF |
| Gene (mouse) | Neurod2 |
| Gene synonyms (mouse) | Ndrf |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | B |
| Motif length | 9 |
| Consensus | RRCAGMTGG |
| GC content | 58.58% |
| Information content (bits; total / per base) | 12.493 / 1.388 |
| Data sources | ChIP-Seq |
| Aligned words | 1000 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mouse | 8 (46) | 0.907 | 0.957 | 0.819 | 0.902 | 0.869 | 0.928 | 2.877 | 3.334 | 173.952 | 237.824 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 2 experiments | median | 0.647 | 0.603 | 0.587 | 0.567 | 0.552 | 0.544 |
| best | 0.653 | 0.608 | 0.588 | 0.569 | 0.552 | 0.546 | |
| TF superclass | Basic domains {1} (TFClass) |
| TF class | Basic helix-loop-helix factors (bHLH) {1.2} (TFClass) |
| TF family | Tal-related {1.2.3} (TFClass) |
| TF subfamily | Neurogenin-ATO {1.2.3.4} (TFClass) |
| TFClass ID | TFClass: 1.2.3.4.2 |
| HGNC | HGNC:7763 |
| MGI | MGI:107755 |
| EntrezGene (human) | GeneID:4761 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:18013 (SSTAR profile) |
| UniProt ID (human) | NDF2_HUMAN |
| UniProt ID (mouse) | NDF2_MOUSE |
| UniProt AC (human) | Q15784 (TFClass) |
| UniProt AC (mouse) | Q62414 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 8 mouse |
| HT-SELEX | 2 |
| Methyl-HT-SELEX | 0 |
| PCM | NDF2.H12INVITRO.0.P.B.pcm |
| PWM | NDF2.H12INVITRO.0.P.B.pwm |
| PFM | NDF2.H12INVITRO.0.P.B.pfm |
| Alignment | NDF2.H12INVITRO.0.P.B.words.tsv |
| Threshold to P-value map | NDF2.H12INVITRO.0.P.B.thr |
| Motif in other formats | |
| JASPAR format | NDF2.H12INVITRO.0.P.B_jaspar_format.txt |
| MEME format | NDF2.H12INVITRO.0.P.B_meme_format.meme |
| Transfac format | NDF2.H12INVITRO.0.P.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 456.0 | 79.0 | 405.0 | 60.0 |
| 02 | 321.0 | 173.0 | 502.0 | 4.0 |
| 03 | 1.0 | 998.0 | 0.0 | 1.0 |
| 04 | 999.0 | 0.0 | 0.0 | 1.0 |
| 05 | 0.0 | 9.0 | 928.0 | 63.0 |
| 06 | 752.0 | 193.0 | 45.0 | 10.0 |
| 07 | 73.0 | 5.0 | 0.0 | 922.0 |
| 08 | 0.0 | 0.0 | 979.0 | 21.0 |
| 09 | 2.0 | 15.0 | 941.0 | 42.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.456 | 0.079 | 0.405 | 0.06 |
| 02 | 0.321 | 0.173 | 0.502 | 0.004 |
| 03 | 0.001 | 0.998 | 0.0 | 0.001 |
| 04 | 0.999 | 0.0 | 0.0 | 0.001 |
| 05 | 0.0 | 0.009 | 0.928 | 0.063 |
| 06 | 0.752 | 0.193 | 0.045 | 0.01 |
| 07 | 0.073 | 0.005 | 0.0 | 0.922 |
| 08 | 0.0 | 0.0 | 0.979 | 0.021 |
| 09 | 0.002 | 0.015 | 0.941 | 0.042 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.598 | -1.137 | 0.48 | -1.406 |
| 02 | 0.248 | -0.365 | 0.694 | -3.783 |
| 03 | -4.525 | 1.379 | -4.982 | -4.525 |
| 04 | 1.38 | -4.982 | -4.982 | -4.525 |
| 05 | -4.982 | -3.156 | 1.307 | -1.358 |
| 06 | 1.097 | -0.257 | -1.684 | -3.066 |
| 07 | -1.215 | -3.622 | -4.982 | 1.3 |
| 08 | -4.982 | -4.982 | 1.36 | -2.405 |
| 09 | -4.213 | -2.711 | 1.32 | -1.75 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.613895 |
| 0.0005 | 4.79873 |
| 0.0001 | 7.35259 |