| Motif | NDF2.H12CORE.0.P.B |
| Gene (human) | NEUROD2 (GeneCards) |
| Gene synonyms (human) | BHLHA1, NDRF |
| Gene (mouse) | Neurod2 |
| Gene synonyms (mouse) | Ndrf |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | B |
| Motif | NDF2.H12CORE.0.P.B |
| Gene (human) | NEUROD2 (GeneCards) |
| Gene synonyms (human) | BHLHA1, NDRF |
| Gene (mouse) | Neurod2 |
| Gene synonyms (mouse) | Ndrf |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | B |
| Motif length | 11 |
| Consensus | RRCAGMTGGbn |
| GC content | 58.72% |
| Information content (bits; total / per base) | 12.257 / 1.114 |
| Data sources | ChIP-Seq |
| Aligned words | 1000 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mouse | 8 (46) | 0.913 | 0.962 | 0.831 | 0.915 | 0.868 | 0.927 | 2.954 | 3.412 | 182.4 | 251.377 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 2 experiments | median | 0.646 | 0.604 | 0.588 | 0.568 | 0.555 | 0.546 |
| best | 0.652 | 0.609 | 0.59 | 0.57 | 0.556 | 0.547 | |
| TF superclass | Basic domains {1} (TFClass) |
| TF class | Basic helix-loop-helix factors (bHLH) {1.2} (TFClass) |
| TF family | Tal-related {1.2.3} (TFClass) |
| TF subfamily | Neurogenin-ATO {1.2.3.4} (TFClass) |
| TFClass ID | TFClass: 1.2.3.4.2 |
| HGNC | HGNC:7763 |
| MGI | MGI:107755 |
| EntrezGene (human) | GeneID:4761 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:18013 (SSTAR profile) |
| UniProt ID (human) | NDF2_HUMAN |
| UniProt ID (mouse) | NDF2_MOUSE |
| UniProt AC (human) | Q15784 (TFClass) |
| UniProt AC (mouse) | Q62414 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 8 mouse |
| HT-SELEX | 2 |
| Methyl-HT-SELEX | 0 |
| PCM | NDF2.H12CORE.0.P.B.pcm |
| PWM | NDF2.H12CORE.0.P.B.pwm |
| PFM | NDF2.H12CORE.0.P.B.pfm |
| Alignment | NDF2.H12CORE.0.P.B.words.tsv |
| Threshold to P-value map | NDF2.H12CORE.0.P.B.thr |
| Motif in other formats | |
| JASPAR format | NDF2.H12CORE.0.P.B_jaspar_format.txt |
| MEME format | NDF2.H12CORE.0.P.B_meme_format.meme |
| Transfac format | NDF2.H12CORE.0.P.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 461.0 | 91.0 | 394.0 | 54.0 |
| 02 | 320.0 | 184.0 | 487.0 | 9.0 |
| 03 | 0.0 | 1000.0 | 0.0 | 0.0 |
| 04 | 999.0 | 0.0 | 0.0 | 1.0 |
| 05 | 1.0 | 9.0 | 946.0 | 44.0 |
| 06 | 672.0 | 288.0 | 32.0 | 8.0 |
| 07 | 83.0 | 5.0 | 1.0 | 911.0 |
| 08 | 0.0 | 0.0 | 955.0 | 45.0 |
| 09 | 8.0 | 40.0 | 900.0 | 52.0 |
| 10 | 143.0 | 434.0 | 213.0 | 210.0 |
| 11 | 349.0 | 184.0 | 296.0 | 171.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.461 | 0.091 | 0.394 | 0.054 |
| 02 | 0.32 | 0.184 | 0.487 | 0.009 |
| 03 | 0.0 | 1.0 | 0.0 | 0.0 |
| 04 | 0.999 | 0.0 | 0.0 | 0.001 |
| 05 | 0.001 | 0.009 | 0.946 | 0.044 |
| 06 | 0.672 | 0.288 | 0.032 | 0.008 |
| 07 | 0.083 | 0.005 | 0.001 | 0.911 |
| 08 | 0.0 | 0.0 | 0.955 | 0.045 |
| 09 | 0.008 | 0.04 | 0.9 | 0.052 |
| 10 | 0.143 | 0.434 | 0.213 | 0.21 |
| 11 | 0.349 | 0.184 | 0.296 | 0.171 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.609 | -0.999 | 0.452 | -1.508 |
| 02 | 0.245 | -0.304 | 0.663 | -3.156 |
| 03 | -4.982 | 1.381 | -4.982 | -4.982 |
| 04 | 1.38 | -4.982 | -4.982 | -4.525 |
| 05 | -4.525 | -3.156 | 1.326 | -1.706 |
| 06 | 0.984 | 0.141 | -2.01 | -3.253 |
| 07 | -1.089 | -3.622 | -4.525 | 1.288 |
| 08 | -4.982 | -4.982 | 1.335 | -1.684 |
| 09 | -3.253 | -1.797 | 1.276 | -1.544 |
| 10 | -0.553 | 0.549 | -0.159 | -0.173 |
| 11 | 0.332 | -0.304 | 0.168 | -0.377 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.815285 |
| 0.0005 | 4.95839 |
| 0.0001 | 7.28196 |