MotifNDF1.H12INVIVO.1.S.C
Gene (human)NEUROD1
(GeneCards)
Gene synonyms (human)BHLHA3, NEUROD
Gene (mouse)Neurod1
Gene synonyms (mouse)Neurod
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
C
Motif length12
ConsensusndvCATATGKbv
GC content48.22%
Information content (bits; total / per base)11.257 / 0.938
Data sourcesHT-SELEX
Aligned words5244

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 6 (39) 0.761 0.851 0.669 0.755 0.733 0.836 2.112 2.633 98.921 247.538
Mouse 4 (21) 0.796 0.851 0.662 0.728 0.802 0.855 2.33 2.602 160.569 366.959

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 1 experiments median 0.844 0.828 0.706 0.702 0.625 0.629
best 0.844 0.828 0.706 0.702 0.625 0.629
TF superclassBasic domains {1} (TFClass)
TF classBasic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF familyTal-related {1.2.3} (TFClass)
TF subfamilyNeurogenin-ATO {1.2.3.4} (TFClass)
TFClass IDTFClass: 1.2.3.4.1
HGNCHGNC:7762
MGIMGI:1339708
EntrezGene (human)GeneID:4760
(SSTAR profile)
EntrezGene (mouse)GeneID:18012
(SSTAR profile)
UniProt ID (human)NDF1_HUMAN
UniProt ID (mouse)NDF1_MOUSE
UniProt AC (human)Q13562
(TFClass)
UniProt AC (mouse)Q60867
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 6 human, 4 mouse
HT-SELEX 1
Methyl-HT-SELEX 0
PCM
ACGT
01849.251315.251655.251424.25
021587.25476.252661.25519.25
031941.0922.01974.0407.0
04282.04251.0654.057.0
054676.025.0525.018.0
0623.09.0552.04660.0
074842.00.0402.00.0
0897.00.00.05147.0
090.03.05241.00.0
100.0370.03638.01236.0
11432.751408.75992.752409.75
121178.51063.52203.5798.5
PFM
ACGT
010.1620.2510.3160.272
020.3030.0910.5070.099
030.370.1760.3760.078
040.0540.8110.1250.011
050.8920.0050.10.003
060.0040.0020.1050.889
070.9230.00.0770.0
080.0180.00.00.982
090.00.0010.9990.0
100.00.0710.6940.236
110.0830.2690.1890.46
120.2250.2030.420.152
PWM
ACGT
01-0.4330.0030.2330.083
020.191-1.010.707-0.924
030.392-0.3510.409-1.166
04-1.5311.175-0.694-3.1
051.27-3.879-0.913-4.177
06-3.956-4.77-0.8631.267
071.305-6.419-1.178-6.419
08-2.584-6.419-6.4191.366
09-6.419-5.5431.384-6.419
10-6.419-1.2611.02-0.059
11-1.1050.072-0.2780.608
12-0.106-0.2090.519-0.495
Standard thresholds
P-value Threshold
0.001 4.352715
0.0005 5.470765
0.0001 7.50075