| Motif | NDF1.H12INVITRO.0.P.B |
| Gene (human) | NEUROD1 (GeneCards) |
| Gene synonyms (human) | BHLHA3, NEUROD |
| Gene (mouse) | Neurod1 |
| Gene synonyms (mouse) | Neurod |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | B |
| Motif | NDF1.H12INVITRO.0.P.B |
| Gene (human) | NEUROD1 (GeneCards) |
| Gene synonyms (human) | BHLHA3, NEUROD |
| Gene (mouse) | Neurod1 |
| Gene synonyms (mouse) | Neurod |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | B |
| Motif length | 11 |
| Consensus | dRRCAGMTGGb |
| GC content | 56.47% |
| Information content (bits; total / per base) | 13.187 / 1.199 |
| Data sources | ChIP-Seq |
| Aligned words | 1001 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 6 (39) | 0.831 | 0.953 | 0.783 | 0.908 | 0.816 | 0.941 | 3.114 | 3.858 | 199.824 | 388.699 |
| Mouse | 4 (21) | 0.938 | 0.973 | 0.864 | 0.939 | 0.931 | 0.958 | 3.8 | 4.337 | 276.328 | 586.194 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 1 experiments | median | 0.806 | 0.731 | 0.68 | 0.654 | 0.596 | 0.596 |
| best | 0.806 | 0.731 | 0.68 | 0.654 | 0.596 | 0.596 | |
| TF superclass | Basic domains {1} (TFClass) |
| TF class | Basic helix-loop-helix factors (bHLH) {1.2} (TFClass) |
| TF family | Tal-related {1.2.3} (TFClass) |
| TF subfamily | Neurogenin-ATO {1.2.3.4} (TFClass) |
| TFClass ID | TFClass: 1.2.3.4.1 |
| HGNC | HGNC:7762 |
| MGI | MGI:1339708 |
| EntrezGene (human) | GeneID:4760 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:18012 (SSTAR profile) |
| UniProt ID (human) | NDF1_HUMAN |
| UniProt ID (mouse) | NDF1_MOUSE |
| UniProt AC (human) | Q13562 (TFClass) |
| UniProt AC (mouse) | Q60867 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 6 human, 4 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 0 |
| PCM | NDF1.H12INVITRO.0.P.B.pcm |
| PWM | NDF1.H12INVITRO.0.P.B.pwm |
| PFM | NDF1.H12INVITRO.0.P.B.pfm |
| Alignment | NDF1.H12INVITRO.0.P.B.words.tsv |
| Threshold to P-value map | NDF1.H12INVITRO.0.P.B.thr |
| Motif in other formats | |
| JASPAR format | NDF1.H12INVITRO.0.P.B_jaspar_format.txt |
| MEME format | NDF1.H12INVITRO.0.P.B_meme_format.meme |
| Transfac format | NDF1.H12INVITRO.0.P.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 189.0 | 153.0 | 382.0 | 277.0 |
| 02 | 421.0 | 58.0 | 482.0 | 40.0 |
| 03 | 474.0 | 212.0 | 315.0 | 0.0 |
| 04 | 1.0 | 1000.0 | 0.0 | 0.0 |
| 05 | 1001.0 | 0.0 | 0.0 | 0.0 |
| 06 | 0.0 | 1.0 | 965.0 | 35.0 |
| 07 | 725.0 | 228.0 | 46.0 | 2.0 |
| 08 | 4.0 | 2.0 | 0.0 | 995.0 |
| 09 | 0.0 | 0.0 | 994.0 | 7.0 |
| 10 | 2.0 | 24.0 | 815.0 | 160.0 |
| 11 | 72.0 | 408.0 | 133.0 | 388.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.189 | 0.153 | 0.382 | 0.277 |
| 02 | 0.421 | 0.058 | 0.482 | 0.04 |
| 03 | 0.474 | 0.212 | 0.315 | 0.0 |
| 04 | 0.001 | 0.999 | 0.0 | 0.0 |
| 05 | 1.0 | 0.0 | 0.0 | 0.0 |
| 06 | 0.0 | 0.001 | 0.964 | 0.035 |
| 07 | 0.724 | 0.228 | 0.046 | 0.002 |
| 08 | 0.004 | 0.002 | 0.0 | 0.994 |
| 09 | 0.0 | 0.0 | 0.993 | 0.007 |
| 10 | 0.002 | 0.024 | 0.814 | 0.16 |
| 11 | 0.072 | 0.408 | 0.133 | 0.388 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.278 | -0.488 | 0.421 | 0.101 |
| 02 | 0.517 | -1.44 | 0.652 | -1.798 |
| 03 | 0.636 | -0.165 | 0.229 | -4.983 |
| 04 | -4.526 | 1.38 | -4.983 | -4.983 |
| 05 | 1.381 | -4.983 | -4.983 | -4.983 |
| 06 | -4.983 | -4.526 | 1.345 | -1.926 |
| 07 | 1.059 | -0.092 | -1.664 | -4.214 |
| 08 | -3.784 | -4.214 | -4.983 | 1.375 |
| 09 | -4.983 | -4.983 | 1.374 | -3.363 |
| 10 | -4.214 | -2.282 | 1.176 | -0.443 |
| 11 | -1.229 | 0.486 | -0.626 | 0.436 |
| P-value | Threshold |
|---|---|
| 0.001 | 2.996635 |
| 0.0005 | 4.25045 |
| 0.0001 | 7.280065 |