MZF1.H12INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	MZF1.H12INVIVO.0.P.B
Gene (human)	MZF1 (GeneCards)
Gene synonyms (human)	MZF, ZNF42, ZSCAN6
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	12
Consensus	dnWGGGGAKYnn
GC content	54.43%
Information content (bits; total / per base)	10.968 / 0.914
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (11)	0.861	0.9	0.774	0.813	0.791	0.831	2.397	2.609	165.092	258.553

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.152
HGNC	HGNC:13108
MGI
EntrezGene (human)	GeneID:7593 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	MZF1_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P28698 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	MZF1.H12INVIVO.0.P.B.pcm
PWM	MZF1.H12INVIVO.0.P.B.pwm
PFM	MZF1.H12INVIVO.0.P.B.pfm
Alignment	MZF1.H12INVIVO.0.P.B.words.tsv
Threshold to P-value map	MZF1.H12INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	MZF1.H12INVIVO.0.P.B_jaspar_format.txt
MEME format	MZF1.H12INVIVO.0.P.B_meme_format.meme
Transfac format	MZF1.H12INVIVO.0.P.B_transfac_format.txt
Homer format	MZF1.H12INVIVO.0.P.B_homer_format_0.001.txt MZF1.H12INVIVO.0.P.B_homer_format_0.0005.txt MZF1.H12INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	407.0	129.0	292.0	172.0
02	327.0	152.0	281.0	240.0
03	325.0	21.0	157.0	497.0
04	90.0	0.0	903.0	7.0
05	7.0	1.0	988.0	4.0
06	6.0	1.0	992.0	1.0
07	1.0	2.0	996.0	1.0
08	988.0	5.0	4.0	3.0
09	121.0	69.0	155.0	655.0
10	14.0	234.0	182.0	570.0
11	222.0	158.0	270.0	350.0
12	231.0	166.0	373.0	230.0

PFM

	A	C	G	T
01	0.407	0.129	0.292	0.172
02	0.327	0.152	0.281	0.24
03	0.325	0.021	0.157	0.497
04	0.09	0.0	0.903	0.007
05	0.007	0.001	0.988	0.004
06	0.006	0.001	0.992	0.001
07	0.001	0.002	0.996	0.001
08	0.988	0.005	0.004	0.003
09	0.121	0.069	0.155	0.655
10	0.014	0.234	0.182	0.57
11	0.222	0.158	0.27	0.35
12	0.231	0.166	0.373	0.23

PWM

	A	C	G	T
01	0.485	-0.655	0.154	-0.371
02	0.267	-0.493	0.116	-0.041
03	0.261	-2.405	-0.461	0.684
04	-1.01	-4.982	1.279	-3.362
05	-3.362	-4.525	1.369	-3.783
06	-3.484	-4.525	1.373	-4.525
07	-4.525	-4.213	1.377	-4.525
08	1.369	-3.622	-3.783	-3.975
09	-0.718	-1.27	-0.474	0.959
10	-2.773	-0.066	-0.315	0.82
11	-0.118	-0.455	0.076	0.335
12	-0.078	-0.406	0.398	-0.083

Standard thresholds

P-value	Threshold
0.001	4.24058
0.0005	5.64769
0.0001	7.66944