MYNN.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	MYNN.H12RSNP.0.P.D
Gene (human)	MYNN (GeneCards)
Gene synonyms (human)	OSZF, ZBTB31
Gene (mouse)	Mynn
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	18
Consensus	vdRRCTYTTAWYYYKdhd
GC content	35.94%
Information content (bits; total / per base)	13.811 / 0.767
Data sources	ChIP-Seq
Aligned words	801

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	3 (19)	0.748	0.795	0.736	0.786	0.757	0.804	3.96	4.477	149.0	279.699

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.54
HGNC	HGNC:14955
MGI	MGI:1931415
EntrezGene (human)	GeneID:55892 (SSTAR profile)
EntrezGene (mouse)	GeneID:80732 (SSTAR profile)
UniProt ID (human)	MYNN_HUMAN
UniProt ID (mouse)	MYNN_MOUSE
UniProt AC (human)	Q9NPC7 (TFClass)
UniProt AC (mouse)	Q99MD8 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	3 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	MYNN.H12RSNP.0.P.D.pcm
PWM	MYNN.H12RSNP.0.P.D.pwm
PFM	MYNN.H12RSNP.0.P.D.pfm
Alignment	MYNN.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	MYNN.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	MYNN.H12RSNP.0.P.D_jaspar_format.txt
MEME format	MYNN.H12RSNP.0.P.D_meme_format.meme
Transfac format	MYNN.H12RSNP.0.P.D_transfac_format.txt
Homer format	MYNN.H12RSNP.0.P.D_homer_format_0.001.txt MYNN.H12RSNP.0.P.D_homer_format_0.0005.txt MYNN.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	226.0	152.0	315.0	108.0
02	250.0	65.0	360.0	126.0
03	129.0	33.0	560.0	79.0
04	451.0	39.0	274.0	37.0
05	10.0	776.0	11.0	4.0
06	4.0	32.0	13.0	752.0
07	32.0	219.0	67.0	483.0
08	18.0	56.0	22.0	705.0
09	6.0	8.0	7.0	780.0
10	682.0	49.0	57.0	13.0
11	198.0	121.0	24.0	458.0
12	46.0	108.0	91.0	556.0
13	100.0	129.0	78.0	494.0
14	73.0	83.0	56.0	589.0
15	84.0	65.0	554.0	98.0
16	402.0	88.0	211.0	100.0
17	462.0	143.0	55.0	141.0
18	440.0	57.0	204.0	100.0

PFM

	A	C	G	T
01	0.282	0.19	0.393	0.135
02	0.312	0.081	0.449	0.157
03	0.161	0.041	0.699	0.099
04	0.563	0.049	0.342	0.046
05	0.012	0.969	0.014	0.005
06	0.005	0.04	0.016	0.939
07	0.04	0.273	0.084	0.603
08	0.022	0.07	0.027	0.88
09	0.007	0.01	0.009	0.974
10	0.851	0.061	0.071	0.016
11	0.247	0.151	0.03	0.572
12	0.057	0.135	0.114	0.694
13	0.125	0.161	0.097	0.617
14	0.091	0.104	0.07	0.735
15	0.105	0.081	0.692	0.122
16	0.502	0.11	0.263	0.125
17	0.577	0.179	0.069	0.176
18	0.549	0.071	0.255	0.125

PWM

	A	C	G	T
01	0.12	-0.273	0.45	-0.61
02	0.22	-1.108	0.583	-0.458
03	-0.435	-1.762	1.023	-0.917
04	0.807	-1.602	0.311	-1.653
05	-2.851	1.348	-2.769	-3.572
06	-3.572	-1.791	-2.622	1.317
07	-1.791	0.089	-1.079	0.876
08	-2.329	-1.253	-2.144	1.253
09	-3.27	-3.039	-3.148	1.354
10	1.22	-1.383	-1.236	-2.622
11	-0.011	-0.498	-2.062	0.823
12	-1.444	-0.61	-0.779	1.016
13	-0.686	-0.435	-0.93	0.898
14	-0.995	-0.869	-1.253	1.073
15	-0.857	-1.108	1.012	-0.706
16	0.693	-0.812	0.052	-0.686
17	0.831	-0.333	-1.271	-0.347
18	0.783	-1.236	0.018	-0.686

Standard thresholds

P-value	Threshold
0.001	3.72106
0.0005	4.73066
0.0001	6.84701