MotifMYF5.H12INVITRO.0.P.D
Gene (human)MYF5
(GeneCards)
Gene synonyms (human)BHLHC2
Gene (mouse)Myf5
Gene synonyms (mouse)Myf-5
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length12
ConsensusdSCAGCTGTYnb
GC content59.5%
Information content (bits; total / per base)14.16 / 1.18
Data sourcesChIP-Seq
Aligned words1007

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (7) 0.8 0.83 0.738 0.775 0.752 0.788 2.736 3.003 123.26 160.638
Mouse 2 (12) 0.827 0.974 0.762 0.937 0.784 0.959 2.742 4.077 200.102 484.553
TF superclassBasic domains {1} (TFClass)
TF classBasic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF familyMyoD-ASC-related {1.2.2} (TFClass)
TF subfamilyMyogenic TFs {1.2.2.1} (TFClass)
TFClass IDTFClass: 1.2.2.1.3
HGNCHGNC:7565
MGIMGI:97252
EntrezGene (human)GeneID:4617
(SSTAR profile)
EntrezGene (mouse)GeneID:17877
(SSTAR profile)
UniProt ID (human)MYF5_HUMAN
UniProt ID (mouse)MYF5_MOUSE
UniProt AC (human)P13349
(TFClass)
UniProt AC (mouse)P24699
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 2 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01292.0135.0186.0394.0
02105.0258.0587.057.0
030.01007.00.00.0
041003.00.01.03.0
052.053.0944.08.0
060.01005.00.02.0
071.00.01.01005.0
081.00.01006.00.0
090.0331.03.0673.0
102.0347.068.0590.0
11133.0347.0296.0231.0
12118.0452.0163.0274.0
PFM
ACGT
010.290.1340.1850.391
020.1040.2560.5830.057
030.01.00.00.0
040.9960.00.0010.003
050.0020.0530.9370.008
060.00.9980.00.002
070.0010.00.0010.998
080.0010.00.9990.0
090.00.3290.0030.668
100.0020.3450.0680.586
110.1320.3450.2940.229
120.1170.4490.1620.272
PWM
ACGT
010.147-0.617-0.30.445
02-0.8650.0240.843-1.462
03-4.9881.381-4.988-4.988
041.377-4.988-4.531-3.982
05-4.219-1.5331.317-3.26
06-4.9881.379-4.988-4.219
07-4.531-4.988-4.5311.379
08-4.531-4.9881.38-4.988
09-4.9880.272-3.9820.979
10-4.2190.319-1.2910.848
11-0.6320.3190.161-0.085
12-0.750.582-0.4310.084
Standard thresholds
P-value Threshold
0.001 2.39501
0.0005 3.661995
0.0001 6.569085