| Motif | MYF5.H12INVITRO.0.P.D |
| Gene (human) | MYF5 (GeneCards) |
| Gene synonyms (human) | BHLHC2 |
| Gene (mouse) | Myf5 |
| Gene synonyms (mouse) | Myf-5 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | MYF5.H12INVITRO.0.P.D |
| Gene (human) | MYF5 (GeneCards) |
| Gene synonyms (human) | BHLHC2 |
| Gene (mouse) | Myf5 |
| Gene synonyms (mouse) | Myf-5 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 12 |
| Consensus | dSCAGCTGTYnb |
| GC content | 59.5% |
| Information content (bits; total / per base) | 14.16 / 1.18 |
| Data sources | ChIP-Seq |
| Aligned words | 1007 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 1 (7) | 0.8 | 0.83 | 0.738 | 0.775 | 0.752 | 0.788 | 2.736 | 3.003 | 123.26 | 160.638 |
| Mouse | 2 (12) | 0.827 | 0.974 | 0.762 | 0.937 | 0.784 | 0.959 | 2.742 | 4.077 | 200.102 | 484.553 |
| TF superclass | Basic domains {1} (TFClass) |
| TF class | Basic helix-loop-helix factors (bHLH) {1.2} (TFClass) |
| TF family | MyoD-ASC-related {1.2.2} (TFClass) |
| TF subfamily | Myogenic TFs {1.2.2.1} (TFClass) |
| TFClass ID | TFClass: 1.2.2.1.3 |
| HGNC | HGNC:7565 |
| MGI | MGI:97252 |
| EntrezGene (human) | GeneID:4617 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:17877 (SSTAR profile) |
| UniProt ID (human) | MYF5_HUMAN |
| UniProt ID (mouse) | MYF5_MOUSE |
| UniProt AC (human) | P13349 (TFClass) |
| UniProt AC (mouse) | P24699 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 1 human, 2 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | MYF5.H12INVITRO.0.P.D.pcm |
| PWM | MYF5.H12INVITRO.0.P.D.pwm |
| PFM | MYF5.H12INVITRO.0.P.D.pfm |
| Alignment | MYF5.H12INVITRO.0.P.D.words.tsv |
| Threshold to P-value map | MYF5.H12INVITRO.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | MYF5.H12INVITRO.0.P.D_jaspar_format.txt |
| MEME format | MYF5.H12INVITRO.0.P.D_meme_format.meme |
| Transfac format | MYF5.H12INVITRO.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 292.0 | 135.0 | 186.0 | 394.0 |
| 02 | 105.0 | 258.0 | 587.0 | 57.0 |
| 03 | 0.0 | 1007.0 | 0.0 | 0.0 |
| 04 | 1003.0 | 0.0 | 1.0 | 3.0 |
| 05 | 2.0 | 53.0 | 944.0 | 8.0 |
| 06 | 0.0 | 1005.0 | 0.0 | 2.0 |
| 07 | 1.0 | 0.0 | 1.0 | 1005.0 |
| 08 | 1.0 | 0.0 | 1006.0 | 0.0 |
| 09 | 0.0 | 331.0 | 3.0 | 673.0 |
| 10 | 2.0 | 347.0 | 68.0 | 590.0 |
| 11 | 133.0 | 347.0 | 296.0 | 231.0 |
| 12 | 118.0 | 452.0 | 163.0 | 274.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.29 | 0.134 | 0.185 | 0.391 |
| 02 | 0.104 | 0.256 | 0.583 | 0.057 |
| 03 | 0.0 | 1.0 | 0.0 | 0.0 |
| 04 | 0.996 | 0.0 | 0.001 | 0.003 |
| 05 | 0.002 | 0.053 | 0.937 | 0.008 |
| 06 | 0.0 | 0.998 | 0.0 | 0.002 |
| 07 | 0.001 | 0.0 | 0.001 | 0.998 |
| 08 | 0.001 | 0.0 | 0.999 | 0.0 |
| 09 | 0.0 | 0.329 | 0.003 | 0.668 |
| 10 | 0.002 | 0.345 | 0.068 | 0.586 |
| 11 | 0.132 | 0.345 | 0.294 | 0.229 |
| 12 | 0.117 | 0.449 | 0.162 | 0.272 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.147 | -0.617 | -0.3 | 0.445 |
| 02 | -0.865 | 0.024 | 0.843 | -1.462 |
| 03 | -4.988 | 1.381 | -4.988 | -4.988 |
| 04 | 1.377 | -4.988 | -4.531 | -3.982 |
| 05 | -4.219 | -1.533 | 1.317 | -3.26 |
| 06 | -4.988 | 1.379 | -4.988 | -4.219 |
| 07 | -4.531 | -4.988 | -4.531 | 1.379 |
| 08 | -4.531 | -4.988 | 1.38 | -4.988 |
| 09 | -4.988 | 0.272 | -3.982 | 0.979 |
| 10 | -4.219 | 0.319 | -1.291 | 0.848 |
| 11 | -0.632 | 0.319 | 0.161 | -0.085 |
| 12 | -0.75 | 0.582 | -0.431 | 0.084 |
| P-value | Threshold |
|---|---|
| 0.001 | 2.39501 |
| 0.0005 | 3.661995 |
| 0.0001 | 6.569085 |