| Motif | MYC.H12INVITRO.0.P.D |
| Gene (human) | MYC (GeneCards) |
| Gene synonyms (human) | BHLHE39 |
| Gene (mouse) | Myc |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | MYC.H12INVITRO.0.P.D |
| Gene (human) | MYC (GeneCards) |
| Gene synonyms (human) | BHLHE39 |
| Gene (mouse) | Myc |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 10 |
| Consensus | vvCACGYGSh |
| GC content | 66.89% |
| Information content (bits; total / per base) | 10.301 / 1.03 |
| Data sources | ChIP-Seq |
| Aligned words | 1000 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 113 (715) | 0.867 | 0.941 | 0.774 | 0.886 | 0.801 | 0.917 | 2.626 | 3.478 | 161.959 | 380.377 |
| Mouse | 79 (488) | 0.874 | 0.948 | 0.774 | 0.893 | 0.811 | 0.912 | 2.578 | 3.217 | 138.433 | 474.26 |
| rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
|---|---|---|---|---|
| # | 100.0 | 7.335 | 0.269 | 0.178 |
| TF superclass | Basic domains {1} (TFClass) |
| TF class | Basic helix-loop-helix factors (bHLH) {1.2} (TFClass) |
| TF family | bHLH-ZIP {1.2.6} (TFClass) |
| TF subfamily | MYC {1.2.6.5} (TFClass) |
| TFClass ID | TFClass: 1.2.6.5.1 |
| HGNC | HGNC:7553 |
| MGI | MGI:97250 |
| EntrezGene (human) | GeneID:4609 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:17869 (SSTAR profile) |
| UniProt ID (human) | MYC_HUMAN |
| UniProt ID (mouse) | MYC_MOUSE |
| UniProt AC (human) | P01106 (TFClass) |
| UniProt AC (mouse) | P01108 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 113 human, 79 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | MYC.H12INVITRO.0.P.D.pcm |
| PWM | MYC.H12INVITRO.0.P.D.pwm |
| PFM | MYC.H12INVITRO.0.P.D.pfm |
| Alignment | MYC.H12INVITRO.0.P.D.words.tsv |
| Threshold to P-value map | MYC.H12INVITRO.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | MYC.H12INVITRO.0.P.D_jaspar_format.txt |
| MEME format | MYC.H12INVITRO.0.P.D_meme_format.meme |
| Transfac format | MYC.H12INVITRO.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 294.0 | 340.0 | 242.0 | 124.0 |
| 02 | 268.0 | 375.0 | 291.0 | 66.0 |
| 03 | 24.0 | 974.0 | 2.0 | 0.0 |
| 04 | 989.0 | 1.0 | 4.0 | 6.0 |
| 05 | 4.0 | 780.0 | 9.0 | 207.0 |
| 06 | 14.0 | 10.0 | 974.0 | 2.0 |
| 07 | 68.0 | 245.0 | 2.0 | 685.0 |
| 08 | 2.0 | 17.0 | 930.0 | 51.0 |
| 09 | 27.0 | 238.0 | 708.0 | 27.0 |
| 10 | 174.0 | 380.0 | 167.0 | 279.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.294 | 0.34 | 0.242 | 0.124 |
| 02 | 0.268 | 0.375 | 0.291 | 0.066 |
| 03 | 0.024 | 0.974 | 0.002 | 0.0 |
| 04 | 0.989 | 0.001 | 0.004 | 0.006 |
| 05 | 0.004 | 0.78 | 0.009 | 0.207 |
| 06 | 0.014 | 0.01 | 0.974 | 0.002 |
| 07 | 0.068 | 0.245 | 0.002 | 0.685 |
| 08 | 0.002 | 0.017 | 0.93 | 0.051 |
| 09 | 0.027 | 0.238 | 0.708 | 0.027 |
| 10 | 0.174 | 0.38 | 0.167 | 0.279 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.161 | 0.306 | -0.032 | -0.694 |
| 02 | 0.069 | 0.403 | 0.151 | -1.313 |
| 03 | -2.281 | 1.355 | -4.213 | -4.982 |
| 04 | 1.37 | -4.525 | -3.783 | -3.484 |
| 05 | -3.783 | 1.133 | -3.156 | -0.187 |
| 06 | -2.773 | -3.066 | 1.355 | -4.213 |
| 07 | -1.284 | -0.02 | -4.213 | 1.004 |
| 08 | -4.213 | -2.598 | 1.309 | -1.563 |
| 09 | -2.171 | -0.049 | 1.037 | -2.171 |
| 10 | -0.359 | 0.416 | -0.4 | 0.109 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.58916 |
| 0.0005 | 5.641855 |
| 0.0001 | 7.661175 |