| Motif | MYBA.H12RSNP.1.PS.D |
| Gene (human) | MYBL1 (GeneCards) |
| Gene synonyms (human) | AMYB |
| Gene (mouse) | Mybl1 |
| Gene synonyms (mouse) | Amyb |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | D |
| Motif | MYBA.H12RSNP.1.PS.D |
| Gene (human) | MYBL1 (GeneCards) |
| Gene synonyms (human) | AMYB |
| Gene (mouse) | Mybl1 |
| Gene synonyms (mouse) | Amyb |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | D |
| Motif length | 9 |
| Consensus | RRCvGTTRv |
| GC content | 56.42% |
| Information content (bits; total / per base) | 9.593 / 1.066 |
| Data sources | ChIP-Seq + HT-SELEX |
| Aligned words | 142 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 1 (7) | 0.825 | 0.87 | 0.761 | 0.79 | 0.72 | 0.78 | 2.085 | 2.271 | 16.102 | 18.569 |
| Mouse | 2 (14) | 0.895 | 0.923 | 0.825 | 0.879 | 0.837 | 0.866 | 2.826 | 3.013 | 188.581 | 281.77 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 2 experiments | median | 0.928 | 0.884 | 0.88 | 0.843 | 0.788 | 0.77 |
| best | 0.965 | 0.935 | 0.956 | 0.925 | 0.885 | 0.862 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Tryptophan cluster factors {3.5} (TFClass) |
| TF family | Myb/SANT domain {3.5.1} (TFClass) |
| TF subfamily | Myb-like {3.5.1.1} (TFClass) |
| TFClass ID | TFClass: 3.5.1.1.2 |
| HGNC | HGNC:7547 |
| MGI | MGI:99925 |
| EntrezGene (human) | GeneID:4603 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:17864 (SSTAR profile) |
| UniProt ID (human) | MYBA_HUMAN |
| UniProt ID (mouse) | MYBA_MOUSE |
| UniProt AC (human) | P10243 (TFClass) |
| UniProt AC (mouse) | P51960 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 1 human, 2 mouse |
| HT-SELEX | 2 |
| Methyl-HT-SELEX | 0 |
| PCM | MYBA.H12RSNP.1.PS.D.pcm |
| PWM | MYBA.H12RSNP.1.PS.D.pwm |
| PFM | MYBA.H12RSNP.1.PS.D.pfm |
| Alignment | MYBA.H12RSNP.1.PS.D.words.tsv |
| Threshold to P-value map | MYBA.H12RSNP.1.PS.D.thr |
| Motif in other formats | |
| JASPAR format | MYBA.H12RSNP.1.PS.D_jaspar_format.txt |
| MEME format | MYBA.H12RSNP.1.PS.D_meme_format.meme |
| Transfac format | MYBA.H12RSNP.1.PS.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 49.0 | 7.0 | 77.0 | 9.0 |
| 02 | 41.0 | 3.0 | 87.0 | 11.0 |
| 03 | 4.0 | 133.0 | 3.0 | 2.0 |
| 04 | 50.0 | 53.0 | 38.0 | 1.0 |
| 05 | 3.0 | 2.0 | 135.0 | 2.0 |
| 06 | 0.0 | 0.0 | 0.0 | 142.0 |
| 07 | 0.0 | 0.0 | 0.0 | 142.0 |
| 08 | 45.0 | 6.0 | 82.0 | 9.0 |
| 09 | 34.0 | 23.0 | 72.0 | 13.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.345 | 0.049 | 0.542 | 0.063 |
| 02 | 0.289 | 0.021 | 0.613 | 0.077 |
| 03 | 0.028 | 0.937 | 0.021 | 0.014 |
| 04 | 0.352 | 0.373 | 0.268 | 0.007 |
| 05 | 0.021 | 0.014 | 0.951 | 0.014 |
| 06 | 0.0 | 0.0 | 0.0 | 1.0 |
| 07 | 0.0 | 0.0 | 0.0 | 1.0 |
| 08 | 0.317 | 0.042 | 0.577 | 0.063 |
| 09 | 0.239 | 0.162 | 0.507 | 0.092 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.313 | -1.495 | 0.756 | -1.278 |
| 02 | 0.14 | -2.16 | 0.876 | -1.099 |
| 03 | -1.948 | 1.296 | -2.16 | -2.429 |
| 04 | 0.333 | 0.39 | 0.066 | -2.798 |
| 05 | -2.16 | -2.429 | 1.311 | -2.429 |
| 06 | -3.39 | -3.39 | -3.39 | 1.361 |
| 07 | -3.39 | -3.39 | -3.39 | 1.361 |
| 08 | 0.23 | -1.624 | 0.818 | -1.278 |
| 09 | -0.042 | -0.416 | 0.69 | -0.948 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.94107 |
| 0.0005 | 5.861465 |
| 0.0001 | 7.479945 |