MYB.H12RSNP.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	MYB.H12RSNP.0.P.B
Gene (human)	MYB (GeneCards)
Gene synonyms (human)
Gene (mouse)	Myb
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	11
Consensus	RRCvGTTRvnv
GC content	53.49%
Information content (bits; total / per base)	9.876 / 0.898
Data sources	ChIP-Seq
Aligned words	1001

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	13 (85)	0.857	0.952	0.739	0.886	0.758	0.894	2.1	3.113	164.42	348.42
Mouse	2 (13)	0.881	0.902	0.769	0.788	0.803	0.83	2.243	2.393	193.114	292.244

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	2.91	1.689	0.261	0.156

TF superclass	Helix-turn-helix domains {3} (TFClass)
TF class	Tryptophan cluster factors {3.5} (TFClass)
TF family	Myb/SANT domain {3.5.1} (TFClass)
TF subfamily	Myb-like {3.5.1.1} (TFClass)
TFClass ID	TFClass: 3.5.1.1.1
HGNC	HGNC:7545
MGI	MGI:97249
EntrezGene (human)	GeneID:4602 (SSTAR profile)
EntrezGene (mouse)	GeneID:17863 (SSTAR profile)
UniProt ID (human)	MYB_HUMAN
UniProt ID (mouse)	MYB_MOUSE
UniProt AC (human)	P10242 (TFClass)
UniProt AC (mouse)	P06876 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	13 human, 2 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	MYB.H12RSNP.0.P.B.pcm
PWM	MYB.H12RSNP.0.P.B.pwm
PFM	MYB.H12RSNP.0.P.B.pfm
Alignment	MYB.H12RSNP.0.P.B.words.tsv
Threshold to P-value map	MYB.H12RSNP.0.P.B.thr
Motif in other formats
JASPAR format	MYB.H12RSNP.0.P.B_jaspar_format.txt
MEME format	MYB.H12RSNP.0.P.B_meme_format.meme
Transfac format	MYB.H12RSNP.0.P.B_transfac_format.txt
Homer format	MYB.H12RSNP.0.P.B_homer_format_0.001.txt MYB.H12RSNP.0.P.B_homer_format_0.0005.txt MYB.H12RSNP.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	256.0	13.0	619.0	113.0
02	297.0	13.0	549.0	142.0
03	7.0	976.0	17.0	1.0
04	481.0	285.0	137.0	98.0
05	0.0	1.0	997.0	3.0
06	5.0	10.0	22.0	964.0
07	0.0	3.0	5.0	993.0
08	365.0	5.0	546.0	85.0
09	275.0	203.0	453.0	70.0
10	348.0	214.0	232.0	207.0
11	285.0	182.0	408.0	126.0

PFM

	A	C	G	T
01	0.256	0.013	0.618	0.113
02	0.297	0.013	0.548	0.142
03	0.007	0.975	0.017	0.001
04	0.481	0.285	0.137	0.098
05	0.0	0.001	0.996	0.003
06	0.005	0.01	0.022	0.963
07	0.0	0.003	0.005	0.992
08	0.365	0.005	0.545	0.085
09	0.275	0.203	0.453	0.07
10	0.348	0.214	0.232	0.207
11	0.285	0.182	0.408	0.126

PWM

	A	C	G	T
01	0.023	-2.84	0.902	-0.787
02	0.17	-2.84	0.782	-0.561
03	-3.363	1.356	-2.599	-4.526
04	0.65	0.129	-0.597	-0.927
05	-4.983	-4.526	1.377	-3.976
06	-3.623	-3.067	-2.363	1.344
07	-4.983	-3.976	-3.623	1.373
08	0.375	-3.623	0.776	-1.067
09	0.094	-0.208	0.59	-1.256
10	0.328	-0.155	-0.075	-0.188
11	0.129	-0.316	0.486	-0.679

Standard thresholds

P-value	Threshold
0.001	4.90051
0.0005	6.01874
0.0001	7.569815