| Motif | MYB.H12INVIVO.0.P.B |
| Gene (human) | MYB (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Myb |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | B |
| Motif | MYB.H12INVIVO.0.P.B |
| Gene (human) | MYB (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Myb |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | B |
| Motif length | 11 |
| Consensus | vhRdCvGTTRn |
| GC content | 51.48% |
| Information content (bits; total / per base) | 9.516 / 0.865 |
| Data sources | ChIP-Seq |
| Aligned words | 1000 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 13 (85) | 0.863 | 0.958 | 0.751 | 0.897 | 0.781 | 0.904 | 2.247 | 3.37 | 176.602 | 378.921 |
| Mouse | 2 (13) | 0.891 | 0.912 | 0.792 | 0.812 | 0.821 | 0.847 | 2.471 | 2.596 | 192.699 | 304.357 |
| rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
|---|---|---|---|---|
| # | 2.27 | 1.04 | 0.211 | 0.13 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Tryptophan cluster factors {3.5} (TFClass) |
| TF family | Myb/SANT domain {3.5.1} (TFClass) |
| TF subfamily | Myb-like {3.5.1.1} (TFClass) |
| TFClass ID | TFClass: 3.5.1.1.1 |
| HGNC | HGNC:7545 |
| MGI | MGI:97249 |
| EntrezGene (human) | GeneID:4602 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:17863 (SSTAR profile) |
| UniProt ID (human) | MYB_HUMAN |
| UniProt ID (mouse) | MYB_MOUSE |
| UniProt AC (human) | P10242 (TFClass) |
| UniProt AC (mouse) | P06876 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 13 human, 2 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | MYB.H12INVIVO.0.P.B.pcm |
| PWM | MYB.H12INVIVO.0.P.B.pwm |
| PFM | MYB.H12INVIVO.0.P.B.pfm |
| Alignment | MYB.H12INVIVO.0.P.B.words.tsv |
| Threshold to P-value map | MYB.H12INVIVO.0.P.B.thr |
| Motif in other formats | |
| JASPAR format | MYB.H12INVIVO.0.P.B_jaspar_format.txt |
| MEME format | MYB.H12INVIVO.0.P.B_meme_format.meme |
| Transfac format | MYB.H12INVIVO.0.P.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 213.0 | 205.0 | 427.0 | 155.0 |
| 02 | 207.0 | 191.0 | 120.0 | 482.0 |
| 03 | 186.0 | 16.0 | 663.0 | 135.0 |
| 04 | 290.0 | 32.0 | 480.0 | 198.0 |
| 05 | 8.0 | 980.0 | 6.0 | 6.0 |
| 06 | 481.0 | 293.0 | 139.0 | 87.0 |
| 07 | 2.0 | 5.0 | 990.0 | 3.0 |
| 08 | 8.0 | 9.0 | 37.0 | 946.0 |
| 09 | 1.0 | 0.0 | 4.0 | 995.0 |
| 10 | 357.0 | 4.0 | 485.0 | 154.0 |
| 11 | 270.0 | 202.0 | 375.0 | 153.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.213 | 0.205 | 0.427 | 0.155 |
| 02 | 0.207 | 0.191 | 0.12 | 0.482 |
| 03 | 0.186 | 0.016 | 0.663 | 0.135 |
| 04 | 0.29 | 0.032 | 0.48 | 0.198 |
| 05 | 0.008 | 0.98 | 0.006 | 0.006 |
| 06 | 0.481 | 0.293 | 0.139 | 0.087 |
| 07 | 0.002 | 0.005 | 0.99 | 0.003 |
| 08 | 0.008 | 0.009 | 0.037 | 0.946 |
| 09 | 0.001 | 0.0 | 0.004 | 0.995 |
| 10 | 0.357 | 0.004 | 0.485 | 0.154 |
| 11 | 0.27 | 0.202 | 0.375 | 0.153 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.159 | -0.197 | 0.532 | -0.474 |
| 02 | -0.187 | -0.267 | -0.727 | 0.653 |
| 03 | -0.293 | -2.653 | 0.971 | -0.61 |
| 04 | 0.147 | -2.01 | 0.649 | -0.231 |
| 05 | -3.253 | 1.361 | -3.484 | -3.484 |
| 06 | 0.651 | 0.158 | -0.582 | -1.043 |
| 07 | -4.213 | -3.622 | 1.371 | -3.975 |
| 08 | -3.253 | -3.156 | -1.872 | 1.326 |
| 09 | -4.525 | -4.982 | -3.783 | 1.376 |
| 10 | 0.354 | -3.783 | 0.659 | -0.48 |
| 11 | 0.076 | -0.212 | 0.403 | -0.487 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.11688 |
| 0.0005 | 6.05386 |
| 0.0001 | 7.47342 |