MYB.H12CORE.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	MYB.H12CORE.0.P.B
Gene (human)	MYB (GeneCards)
Gene synonyms (human)
Gene (mouse)	Myb
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	11
Consensus	RRCvGTTRvnn
GC content	53.04%
Information content (bits; total / per base)	9.386 / 0.853
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	13 (85)	0.859	0.952	0.743	0.889	0.763	0.895	2.088	3.117	175.409	365.959
Mouse	2 (13)	0.883	0.907	0.775	0.798	0.805	0.835	2.248	2.399	194.284	308.699

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	2.815	1.469	0.262	0.152

TF superclass	Helix-turn-helix domains {3} (TFClass)
TF class	Tryptophan cluster factors {3.5} (TFClass)
TF family	Myb/SANT domain {3.5.1} (TFClass)
TF subfamily	Myb-like {3.5.1.1} (TFClass)
TFClass ID	TFClass: 3.5.1.1.1
HGNC	HGNC:7545
MGI	MGI:97249
EntrezGene (human)	GeneID:4602 (SSTAR profile)
EntrezGene (mouse)	GeneID:17863 (SSTAR profile)
UniProt ID (human)	MYB_HUMAN
UniProt ID (mouse)	MYB_MOUSE
UniProt AC (human)	P10242 (TFClass)
UniProt AC (mouse)	P06876 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	13 human, 2 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	MYB.H12CORE.0.P.B.pcm
PWM	MYB.H12CORE.0.P.B.pwm
PFM	MYB.H12CORE.0.P.B.pfm
Alignment	MYB.H12CORE.0.P.B.words.tsv
Threshold to P-value map	MYB.H12CORE.0.P.B.thr
Motif in other formats
JASPAR format	MYB.H12CORE.0.P.B_jaspar_format.txt
MEME format	MYB.H12CORE.0.P.B_meme_format.meme
Transfac format	MYB.H12CORE.0.P.B_transfac_format.txt
Homer format	MYB.H12CORE.0.P.B_homer_format_0.001.txt MYB.H12CORE.0.P.B_homer_format_0.0005.txt MYB.H12CORE.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	246.0	7.0	613.0	134.0
02	267.0	17.0	544.0	172.0
03	16.0	973.0	10.0	1.0
04	504.0	310.0	116.0	70.0
05	1.0	5.0	992.0	2.0
06	7.0	16.0	46.0	931.0
07	2.0	1.0	8.0	989.0
08	352.0	5.0	521.0	122.0
09	270.0	208.0	391.0	131.0
10	321.0	265.0	223.0	191.0
11	274.0	209.0	354.0	163.0

PFM

	A	C	G	T
01	0.246	0.007	0.613	0.134
02	0.267	0.017	0.544	0.172
03	0.016	0.973	0.01	0.001
04	0.504	0.31	0.116	0.07
05	0.001	0.005	0.992	0.002
06	0.007	0.016	0.046	0.931
07	0.002	0.001	0.008	0.989
08	0.352	0.005	0.521	0.122
09	0.27	0.208	0.391	0.131
10	0.321	0.265	0.223	0.191
11	0.274	0.209	0.354	0.163

PWM

	A	C	G	T
01	-0.016	-3.362	0.893	-0.618
02	0.065	-2.598	0.774	-0.371
03	-2.653	1.354	-3.066	-4.525
04	0.698	0.214	-0.76	-1.255
05	-4.525	-3.622	1.373	-4.213
06	-3.362	-2.653	-1.663	1.31
07	-4.213	-4.525	-3.253	1.37
08	0.34	-3.622	0.731	-0.71
09	0.076	-0.183	0.445	-0.64
10	0.248	0.058	-0.113	-0.267
11	0.091	-0.178	0.346	-0.424

Standard thresholds

P-value	Threshold
0.001	5.09765
0.0005	6.091635
0.0001	7.485025