MotifMXI1.H12INVIVO.0.P.B
Gene (human)MXI1
(GeneCards)
Gene synonyms (human)BHLHC11
Gene (mouse)Mxi1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length11
ConsensushvCACGTGKbn
GC content62.37%
Information content (bits; total / per base)10.614 / 0.965
Data sourcesChIP-Seq
Aligned words1000

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (6) 0.823 0.84 0.743 0.762 0.755 0.775 2.626 2.735 199.228 247.721
Mouse 2 (13) 0.857 0.913 0.774 0.871 0.816 0.876 2.984 3.506 237.745 385.18

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 4.983 2.159 0.153 0.037
TF superclassBasic domains {1} (TFClass)
TF classBasic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF familybHLH-ZIP {1.2.6} (TFClass)
TF subfamilyMAD {1.2.6.7} (TFClass)
TFClass IDTFClass: 1.2.6.7.5
HGNCHGNC:7534
MGIMGI:97245
EntrezGene (human)GeneID:4601
(SSTAR profile)
EntrezGene (mouse)GeneID:17859
(SSTAR profile)
UniProt ID (human)MXI1_HUMAN
UniProt ID (mouse)MXI1_MOUSE
UniProt AC (human)P50539
(TFClass)
UniProt AC (mouse)P50540
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 2 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01395.0256.081.0268.0
02202.0291.0478.029.0
0315.0967.016.02.0
04932.012.045.011.0
059.0944.08.039.0
0698.017.0879.06.0
0721.053.08.0918.0
0814.09.0917.060.0
0996.066.0625.0213.0
1098.0463.0276.0163.0
11179.0286.0164.0371.0
PFM
ACGT
010.3950.2560.0810.268
020.2020.2910.4780.029
030.0150.9670.0160.002
040.9320.0120.0450.011
050.0090.9440.0080.039
060.0980.0170.8790.006
070.0210.0530.0080.918
080.0140.0090.9170.06
090.0960.0660.6250.213
100.0980.4630.2760.163
110.1790.2860.1640.371
PWM
ACGT
010.4550.024-1.1130.069
02-0.2120.1510.645-2.103
03-2.7111.348-2.653-4.213
041.311-2.909-1.684-2.985
05-3.1561.324-3.253-1.821
06-0.926-2.5981.252-3.484
07-2.405-1.526-3.2531.296
08-2.773-3.1561.295-1.406
09-0.946-1.3130.912-0.159
10-0.9260.6130.098-0.424
11-0.3310.134-0.4180.393
Standard thresholds
P-value Threshold
0.001 4.56159
0.0005 5.440925
0.0001 7.37972