MotifMUSC.H12INVIVO.0.SM.D
Gene (human)MSC
(GeneCards)
Gene synonyms (human)ABF1, BHLHA22
Gene (mouse)Msc
Gene synonyms (mouse)Myor
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length12
ConsensusdvCATATGKTvn
GC content46.85%
Information content (bits; total / per base)12.591 / 1.049
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words6729

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.973 0.96 0.909 0.892 0.779 0.78
best 0.998 0.996 0.992 0.989 0.963 0.957
Methyl HT-SELEX, 2 experiments median 0.985 0.978 0.941 0.932 0.854 0.855
best 0.998 0.996 0.992 0.989 0.963 0.957
Non-Methyl HT-SELEX, 2 experiments median 0.941 0.919 0.859 0.838 0.746 0.742
best 0.975 0.962 0.928 0.908 0.815 0.806
TF superclassBasic domains {1} (TFClass)
TF classBasic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF familyTal-related {1.2.3} (TFClass)
TF subfamilyMESP {1.2.3.3} (TFClass)
TFClass IDTFClass: 1.2.3.3.4
HGNCHGNC:7321
MGIMGI:1333884
EntrezGene (human)GeneID:9242
(SSTAR profile)
EntrezGene (mouse)GeneID:17681
(SSTAR profile)
UniProt ID (human)MUSC_HUMAN
UniProt ID (mouse)MUSC_MOUSE
UniProt AC (human)O60682
(TFClass)
UniProt AC (mouse)O88940
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 2
Methyl-HT-SELEX 2
PCM
ACGT
012358.75870.752567.75931.75
022115.52979.51297.5336.5
03189.06449.080.011.0
046652.02.060.015.0
050.02.01632.05095.0
065166.01476.087.00.0
0740.00.00.06689.0
080.01.06727.01.0
09143.0104.04229.02253.0
10118.01206.0106.05299.0
111800.75886.753503.75537.75
121624.01655.01908.01542.0
PFM
ACGT
010.3510.1290.3820.138
020.3140.4430.1930.05
030.0280.9580.0120.002
040.9890.00.0090.002
050.00.00.2430.757
060.7680.2190.0130.0
070.0060.00.00.994
080.00.01.00.0
090.0210.0150.6280.335
100.0180.1790.0160.787
110.2680.1320.5210.08
120.2410.2460.2840.229
PWM
ACGT
010.338-0.6570.422-0.59
020.2290.571-0.259-1.604
03-2.1761.343-3.02-4.849
041.374-5.993-3.299-4.584
05-6.639-5.993-0.031.107
061.121-0.131-2.938-6.639
07-3.687-6.639-6.6391.379
08-6.639-6.2651.385-6.265
09-2.451-2.7640.9210.292
10-2.64-0.332-2.7451.146
110.068-0.6390.733-1.138
12-0.035-0.0160.126-0.087
Standard thresholds
P-value Threshold
0.001 3.29923
0.0005 4.670475
0.0001 7.396645