| Motif | MUSC.H12INVIVO.0.SM.D |
| Gene (human) | MSC (GeneCards) |
| Gene synonyms (human) | ABF1, BHLHA22 |
| Gene (mouse) | Msc |
| Gene synonyms (mouse) | Myor |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | MUSC.H12INVIVO.0.SM.D |
| Gene (human) | MSC (GeneCards) |
| Gene synonyms (human) | ABF1, BHLHA22 |
| Gene (mouse) | Msc |
| Gene synonyms (mouse) | Myor |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 12 |
| Consensus | dvCATATGKTvn |
| GC content | 46.85% |
| Information content (bits; total / per base) | 12.591 / 1.049 |
| Data sources | HT-SELEX + Methyl-HT-SELEX |
| Aligned words | 6729 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 4 experiments | median | 0.973 | 0.96 | 0.909 | 0.892 | 0.779 | 0.78 |
| best | 0.998 | 0.996 | 0.992 | 0.989 | 0.963 | 0.957 | |
| Methyl HT-SELEX, 2 experiments | median | 0.985 | 0.978 | 0.941 | 0.932 | 0.854 | 0.855 |
| best | 0.998 | 0.996 | 0.992 | 0.989 | 0.963 | 0.957 | |
| Non-Methyl HT-SELEX, 2 experiments | median | 0.941 | 0.919 | 0.859 | 0.838 | 0.746 | 0.742 |
| best | 0.975 | 0.962 | 0.928 | 0.908 | 0.815 | 0.806 | |
| TF superclass | Basic domains {1} (TFClass) |
| TF class | Basic helix-loop-helix factors (bHLH) {1.2} (TFClass) |
| TF family | Tal-related {1.2.3} (TFClass) |
| TF subfamily | MESP {1.2.3.3} (TFClass) |
| TFClass ID | TFClass: 1.2.3.3.4 |
| HGNC | HGNC:7321 |
| MGI | MGI:1333884 |
| EntrezGene (human) | GeneID:9242 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:17681 (SSTAR profile) |
| UniProt ID (human) | MUSC_HUMAN |
| UniProt ID (mouse) | MUSC_MOUSE |
| UniProt AC (human) | O60682 (TFClass) |
| UniProt AC (mouse) | O88940 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 2 |
| Methyl-HT-SELEX | 2 |
| PCM | MUSC.H12INVIVO.0.SM.D.pcm |
| PWM | MUSC.H12INVIVO.0.SM.D.pwm |
| PFM | MUSC.H12INVIVO.0.SM.D.pfm |
| Alignment | MUSC.H12INVIVO.0.SM.D.words.tsv |
| Threshold to P-value map | MUSC.H12INVIVO.0.SM.D.thr |
| Motif in other formats | |
| JASPAR format | MUSC.H12INVIVO.0.SM.D_jaspar_format.txt |
| MEME format | MUSC.H12INVIVO.0.SM.D_meme_format.meme |
| Transfac format | MUSC.H12INVIVO.0.SM.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2358.75 | 870.75 | 2567.75 | 931.75 |
| 02 | 2115.5 | 2979.5 | 1297.5 | 336.5 |
| 03 | 189.0 | 6449.0 | 80.0 | 11.0 |
| 04 | 6652.0 | 2.0 | 60.0 | 15.0 |
| 05 | 0.0 | 2.0 | 1632.0 | 5095.0 |
| 06 | 5166.0 | 1476.0 | 87.0 | 0.0 |
| 07 | 40.0 | 0.0 | 0.0 | 6689.0 |
| 08 | 0.0 | 1.0 | 6727.0 | 1.0 |
| 09 | 143.0 | 104.0 | 4229.0 | 2253.0 |
| 10 | 118.0 | 1206.0 | 106.0 | 5299.0 |
| 11 | 1800.75 | 886.75 | 3503.75 | 537.75 |
| 12 | 1624.0 | 1655.0 | 1908.0 | 1542.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.351 | 0.129 | 0.382 | 0.138 |
| 02 | 0.314 | 0.443 | 0.193 | 0.05 |
| 03 | 0.028 | 0.958 | 0.012 | 0.002 |
| 04 | 0.989 | 0.0 | 0.009 | 0.002 |
| 05 | 0.0 | 0.0 | 0.243 | 0.757 |
| 06 | 0.768 | 0.219 | 0.013 | 0.0 |
| 07 | 0.006 | 0.0 | 0.0 | 0.994 |
| 08 | 0.0 | 0.0 | 1.0 | 0.0 |
| 09 | 0.021 | 0.015 | 0.628 | 0.335 |
| 10 | 0.018 | 0.179 | 0.016 | 0.787 |
| 11 | 0.268 | 0.132 | 0.521 | 0.08 |
| 12 | 0.241 | 0.246 | 0.284 | 0.229 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.338 | -0.657 | 0.422 | -0.59 |
| 02 | 0.229 | 0.571 | -0.259 | -1.604 |
| 03 | -2.176 | 1.343 | -3.02 | -4.849 |
| 04 | 1.374 | -5.993 | -3.299 | -4.584 |
| 05 | -6.639 | -5.993 | -0.03 | 1.107 |
| 06 | 1.121 | -0.131 | -2.938 | -6.639 |
| 07 | -3.687 | -6.639 | -6.639 | 1.379 |
| 08 | -6.639 | -6.265 | 1.385 | -6.265 |
| 09 | -2.451 | -2.764 | 0.921 | 0.292 |
| 10 | -2.64 | -0.332 | -2.745 | 1.146 |
| 11 | 0.068 | -0.639 | 0.733 | -1.138 |
| 12 | -0.035 | -0.016 | 0.126 | -0.087 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.29923 |
| 0.0005 | 4.670475 |
| 0.0001 | 7.396645 |