MotifMSGN1.H12INVITRO.0.PSM.A
Gene (human)MSGN1
(GeneCards)
Gene synonyms (human)
Gene (mouse)Msgn1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
A
Motif length12
ConsensusnvvCAWATGGYn
GC content47.62%
Information content (bits; total / per base)13.06 / 1.088
Data sourcesChIP-Seq + HT-SELEX + Methyl-HT-SELEX
Aligned words9955

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 1 (7) 0.933 0.949 0.897 0.914 0.919 0.952 4.223 4.821 383.114 394.602

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.996 0.992 0.992 0.987 0.969 0.962
best 0.996 0.994 0.994 0.99 0.972 0.966
Methyl HT-SELEX, 1 experiments median 0.996 0.994 0.994 0.99 0.972 0.966
best 0.996 0.994 0.994 0.99 0.972 0.966
Non-Methyl HT-SELEX, 1 experiments median 0.995 0.99 0.991 0.985 0.966 0.957
best 0.995 0.99 0.991 0.985 0.966 0.957
TF superclassBasic domains {1} (TFClass)
TF classBasic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF familyTal-related {1.2.3} (TFClass)
TF subfamilyMESP {1.2.3.3} (TFClass)
TFClass IDTFClass: 1.2.3.3.6
HGNCHGNC:14907
MGIMGI:1860483
EntrezGene (human)GeneID:343930
(SSTAR profile)
EntrezGene (mouse)GeneID:56184
(SSTAR profile)
UniProt ID (human)MSGN1_HUMAN
UniProt ID (mouse)MSGN1_MOUSE
UniProt AC (human)A6NI15
(TFClass)
UniProt AC (mouse)Q9JK54
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 1 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
012273.52269.53421.51990.5
023463.51319.54511.5660.5
033113.04614.01644.0584.0
048.09926.012.09.0
059942.02.08.03.0
065555.06.04.04390.0
079811.00.02.0142.0
081.011.01.09942.0
090.02.09934.019.0
10269.0419.07912.01355.0
11331.254211.25550.254862.25
121926.253260.252848.251920.25
PFM
ACGT
010.2280.2280.3440.2
020.3480.1330.4530.066
030.3130.4630.1650.059
040.0010.9970.0010.001
050.9990.00.0010.0
060.5580.0010.00.441
070.9860.00.00.014
080.00.0010.00.999
090.00.00.9980.002
100.0270.0420.7950.136
110.0330.4230.0550.488
120.1930.3270.2860.193
PWM
ACGT
01-0.09-0.0920.318-0.223
020.33-0.6340.594-1.324
030.2240.617-0.414-1.447
04-5.4881.383-5.16-5.396
051.384-6.362-5.488-6.152
060.802-5.704-5.980.567
071.371-6.987-6.362-2.849
08-6.626-5.233-6.6261.384
09-6.987-6.3621.383-4.762
10-2.217-1.7771.156-0.607
11-2.0110.526-1.5060.669
12-0.2560.270.135-0.259
Standard thresholds
P-value Threshold
0.001 2.07181
0.0005 3.712995
0.0001 7.35957