MotifMNX1.H12INVITRO.0.SM.B
Gene (human)MNX1
(GeneCards)
Gene synonyms (human)HLXB9
Gene (mouse)Mnx1
Gene synonyms (mouse)Hlxb9
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length12
ConsensusnvvYTAATTAbn
GC content34.39%
Information content (bits; total / per base)11.903 / 0.992
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9170

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 3 experiments median 0.97 0.953 0.948 0.923 0.887 0.866
best 0.975 0.96 0.954 0.932 0.9 0.871
Methyl HT-SELEX, 1 experiments median 0.975 0.96 0.954 0.932 0.887 0.866
best 0.975 0.96 0.954 0.932 0.887 0.866
Non-Methyl HT-SELEX, 2 experiments median 0.754 0.739 0.734 0.719 0.705 0.69
best 0.97 0.953 0.948 0.923 0.9 0.871

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 2 0.742 0.163 0.762 0.523
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyHOX-related {3.1.1} (TFClass)
TF subfamilyMNX {3.1.1.13} (TFClass)
TFClass IDTFClass: 3.1.1.13.1
HGNCHGNC:4979
MGIMGI:109160
EntrezGene (human)GeneID:3110
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)MNX1_HUMAN
UniProt ID (mouse)MNX1_MOUSE
UniProt AC (human)P50219
(TFClass)
UniProt AC (mouse)Q9QZW9
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 2
Methyl-HT-SELEX 1
PCM
ACGT
012500.52253.52349.52066.5
021834.253984.251837.251514.25
032711.02188.03885.0386.0
04521.05113.0969.02567.0
050.00.00.09170.0
069170.00.00.00.0
079170.00.00.00.0
080.00.00.09170.0
091.0179.0327.08663.0
106694.021.02397.058.0
11801.54823.52336.51208.5
121721.252769.252405.252274.25
PFM
ACGT
010.2730.2460.2560.225
020.20.4340.20.165
030.2960.2390.4240.042
040.0570.5580.1060.28
050.00.00.01.0
061.00.00.00.0
071.00.00.00.0
080.00.00.01.0
090.00.020.0360.945
100.730.0020.2610.006
110.0870.5260.2550.132
120.1880.3020.2620.248
PWM
ACGT
010.087-0.0170.025-0.104
02-0.2230.552-0.221-0.414
030.168-0.0470.527-1.777
04-1.4780.802-0.860.113
05-6.914-6.914-6.9141.386
061.386-6.914-6.914-6.914
071.386-6.914-6.914-6.914
08-6.914-6.914-6.9141.386
09-6.55-2.538-1.9411.329
101.071-4.5910.045-3.639
11-1.0490.7430.019-0.639
12-0.2860.1890.048-0.008
Standard thresholds
P-value Threshold
0.001 3.20136
0.0005 4.98547
0.0001 7.799305